Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00028565001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00028565001
Family
SNF2
3D structure (top 5)
1Z3I 1Z5Z 1Z63 3DMQ 1WP9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

875318 Score: 1

Arabidopsis thaliana

AT2G18760.1 Score: 1

Cyanidioschyzon merolae

CMO092C Score: 1

Chlorella sp. NC64A

134981 Score: 1

Carica papaya

evm.TU.supercontig_165.15 Score: 1

Chlamydomonas reinhardtii

7539 Score: 1

Coccomyxa sp. C-169

81097 Score: 1

Micromonas pusilla CCMP1545

32608 Score: 1

Micromonas sp. RCC299

58407 Score: 1

Ostreococcus lucimarinus

35826 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g01312.1 Score: 1

Ostreococcus tauri

15472 Score: 1

Physcomitrella patens

77632 Score: 1

Populus trichocarpa

205910 Score: 1

Sorghum bicolor

143107 Score: 1

Selaginella moellendorffii

235696 Score: 1

Zea mays

GRMZM2G070264_P01 Score: 1

Expression data

Expressed Sequence Tags

At.39947
Arabidopsis thaliana CHR8 (chromatin remodeling 8); ATP binding / DNA binding / helicase (CHR8) mRNA, complete cds /cds=p(1,3564) /gb=NM_127432
Os.24886
Oryza sativa Japonica Group OsCSB mRNA for Cockayne syndrome group B, complete cds /cds=p(1,3564) /gb=AB111944
Vvi.4565
CAB2SG0006_IVaR_H01 Cabernet Sauvignon Berry - CAB2SG Vitis vinifera cDNA clone CAB2SG0006_IVaR_H01 3', mRNA sequence /clone=CAB2SG0006_IVaR_H01 /clone_end=3' /gb=CB349551
Vvi.6157
WIN0556.C21_D14 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0556_D14 3', mRNA sequence /clone=WIN0556_D14 /clone_end=3' /gb=EC952606

Domain Architecture

SNF2_N PF00176 GSVIVP00028565001
DomainStartEndBit scoreE-value
SNF2_N3606443521.1e-102
Helicase_C69777588.22.8e-23

Sequences