Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00028718001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00028718001
Family
Sigma70-like
3D structure (top 5)
1SIG 1L0O 2A6H 1L9Z 1RP3
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

909325 Score: 1

Arabidopsis thaliana

AT5G13730.1 Score: 1

Cyanidioschyzon merolae

CMQ213C Score: 1

Carica papaya

evm.TU.supercontig_125.40 Score: 1

Populus trichocarpa

202953 Score: 1

Sorghum bicolor

4779347 Score: 1

Zea mays

GRMZM2G003182_P01 Score: 1
GRMZM2G090783_P01 Score: 1
GRMZM2G100086_P01 Score: 1
GRMZM2G164084_P01 Score: 1

Expression data

Expressed Sequence Tags

At.49018
Arabidopsis thaliana sigma-like factor (MSH12.20) mRNA, complete cds /cds=p(89,892) /gb=AY059907

Domain Architecture

Sigma70_r2 PF04542 GSVIVP00028718001
DomainStartEndBit scoreE-value
Sigma70_r211918992.31.6e-24
Sigma70_r319327551.82.6e-12
Sigma70_r428734076.88.1e-20

Sequences