Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00029003001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00029003001
Family
PBF-2-like
3D structure (top 5)
1L3A
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

471615 Score: 1

Arabidopsis thaliana

AT1G14410.1 Score: 1

Carica papaya

evm.TU.supercontig_1007.4 Score: 1

Micromonas pusilla CCMP1545

30105 Score: 1

Ostreococcus lucimarinus

8400 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g05350.1 Score: 1

Ostreococcus tauri

37364 Score: 1

Populus trichocarpa

420425 Score: 1

Sorghum bicolor

4769655 Score: 1

Selaginella moellendorffii

84708 Score: 1

Zea mays

GRMZM2G117529_P01 Score: 1
GRMZM2G155662_P01 Score: 1

Expression data

Expressed Sequence Tags

At.12043
Arabidopsis thaliana ATWHY1/PTAC1 (A. THALIANA WHIRLY 1); DNA binding / telomeric DNA binding (ATWHY1/PTAC1) mRNA, complete cds /cds=p(95,886) /gb=NM_101308
At.28009
Arabidopsis thaliana ATWHY2 (A. THALIANA WHIRLY 2); DNA binding (ATWHY2) mRNA, complete cds /cds=p(32,748) /gb=NM_105795
At.41460
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-96-O15 /cds=p(52,858) /gb=AK230205
Mtr.16831
EST1226718 MTY Medicago truncatula cDNA clone MTYAX72, mRNA sequence /clone=MTYAX72 /gb=DW017757
Mtr.6904
Medicago truncatula clone MTYF5_F6_F7_F81G-F-20 unknown mRNA /cds=p(35,754) /gb=BT051658
Os.8272
CT858588 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCEA048P18, mRNA sequence /clone=OSIGCEA048P18 /gb=CT858588
Pba.11472
WS0117.BR_P12 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0117_P12 5', mRNA sequence /clone=WS0117_P12 /clone_end=5' /gb=DT499318
Pth.11472
Populus trichocarpa clone WS0117_P12 unknown mRNA /cds=p(59,856) /gb=EF146407
Ptp.940
C021P12.3pR Populus strain T89 leaves Populus tremula x Populus tremuloides cDNA clone C021P12 3', mRNA sequence /clone=C021P12 /clone_end=3' /gb=CK089605
Sbi.5740
WOUND1_59_A07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_59_A07_A002 5', mRNA sequence /clone=WOUND1_59_A07_A002 /clone_end=5' /gb=CN148887 /gi=45990264
Vvi.2264
CA23EI03IIRb_C12 Cabernet Sauvignon Leaf - CA23EI Vitis vinifera cDNA clone CA23EI03IIRb_C12 3', mRNA sequence /clone=CA23EI03IIRb_C12 /clone_end=3' /gb=CB339490

Domain Architecture

Whirly PF08536 GSVIVP00029003001
DomainStartEndBit scoreE-value
Whirly92230395.31.1e-115

Sequences