Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00029107001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00029107001
Family
MYB-related
3D structure (top 5)
2CUJ 2ELJ 2AQE 2ELK 1X41
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

478110 Score: 1

Arabidopsis thaliana

AT3G07740.1 Score: 1

Micromonas pusilla CCMP1545

35008 Score: 1

Micromonas sp. RCC299

82818 Score: 1

Ostreococcus lucimarinus

51202 Score: 1.01
2829 Score: 1

Vitis vinifera

GSVIVP00009957001 Score: 1
GSVIVP00029107001 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g53960.1 Score: 1
LOC_Os03g53960.2 Score: 0.977

Ostreococcus tauri

20688 Score: 1

Physcomitrella patens

116913 Score: 1
173268 Score: 1

Populus trichocarpa

247017 Score: 1

Sorghum bicolor

4867867 Score: 1

Selaginella moellendorffii

96986 Score: 1

Zea mays

GRMZM2G177958_P01 Score: 1

Expression data

Expressed Sequence Tags

At.18344
Arabidopsis thaliana ADA2A (Arabidopsis adaptor 2A homolog); DNA binding / transcription factor (ADA2A) mRNA, complete cds /cds=p(333,1766) /gb=NM_202522
At.4412
Arabidopsis thaliana ADA2B (PROPORZ1); DNA binding / transcription factor (ADA2B) mRNA, complete cds /cds=p(312,1775) /gb=NM_117737
Os.59266
Oryza sativa Japonica Group cDNA clone:J023128E10, full insert sequence /cds=p(258,1961) /gb=AK072597
Pth.11830
F099P79.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F099P79 3', mRNA sequence /clone=F099P79 /clone_end=3' /gb=CK091432
Sbi.8578
RHOH1_44_H08.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_44_H08_A002 5', mRNA sequence /clone=RHOH1_44_H08_A002 /clone_end=5' /gb=CN130944 /gi=45959951
Vvi.12822
WIN1138.C21_N05 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1138_N05 3', mRNA sequence /clone=WIN1138_N05 /clone_end=3' /gb=EC990184

Domain Architecture

ZZ PF00569 GSVIVP00029107001
DomainStartEndBit scoreE-value
ZZ459038.82.2e-08
Myb_DNA-binding10615246.69.9e-11
SWIRM47456050.47.1e-12

Sequences