Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00029141001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00029141001
Family
C3H
3D structure (top 5)
2E5G 3D2W 1WF0 2JVO 2CPF
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

480130 Score: 1

Arabidopsis thaliana

AT2G05160.1 Score: 1

Carica papaya

evm.TU.supercontig_211.13 Score: 1

Physcomitrella patens

137259 Score: 1

Populus trichocarpa

732453 Score: 1

Expression data

Expressed Sequence Tags

At.33921
Arabidopsis thaliana RNA binding (AT3G63450) mRNA, complete cds /cds=p(1,1215) /gb=NM_116210
At.41216
Arabidopsis thaliana zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (AT2G05160) mRNA, complete cds /cds=p(1,1611) /gb=NM_126543
At.53909
Arabidopsis thaliana RNA recognition motif (RRM)-containing protein (AT3G52980) mRNA, complete cds /cds=p(1,1146) /gb=NM_115158
Ppa.22636
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_137259) mRNA, complete cds /cds=p(1,1161) /gb=XM_001771223
Ppa.22867
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_119974) mRNA, complete cds /cds=p(1,1266) /gb=XM_001758199
Vvi.12680
S1G00230 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G00230, mRNA sequence /clone=S1G00230 /gb=EE075516

Domain Architecture

zf-CCCH PF00642 GSVIVP00029141001
DomainStartEndBit scoreE-value
zf-CCCH167192110.054

Sequences