Details for gene GSVIVP00029300001 - Plant Transcription Factor database

Species: Vitis vinifera Gene model GSVIVP00029300001 Family Alfin-like 3D structure (top 5) 1WEP 1WE9 1WEE 2KGG 2RI7
	PDB entry:

Genoscope

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os05g07040.1 Score: 1

Sorghum bicolor

4894087 Score: 1

Zea mays

GRMZM2G148810_P01 Score: 1
GRMZM2G017142_P01 Score: 0.908

At.17411: Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB35ZA09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX822406
At.27212: Arabidopsis thaliana PHD finger family protein (AT3G42790) mRNA, complete cds /cds=p(164,916) /gb=NM_114147
At.43821: Arabidopsis thaliana PHD finger family protein (AT5G05610) mRNA, complete cds /cds=p(163,888) /gb=NM_120643
At.68535: Arabidopsis thaliana PHD finger family protein (AT5G20510) mRNA, complete cds /cds=p(63,845) /gb=NM_122058
Hv.10724: Hordeum vulgare subsp. vulgare cDNA clone: FLbaf62e08, mRNA sequence /gb=AK250191
Mtr.2273: EST1225172 MTY Medicago truncatula cDNA clone MTYAE43, mRNA sequence /clone=MTYAE43 /gb=DW016211
Mtr.2282: EST1224853 MTY Medicago truncatula cDNA clone MTYAA88, mRNA sequence /clone=MTYAA88 /gb=DW015892
Os.51192: Oryza sativa Japonica Group cDNA clone:006-308-G07, full insert sequence /gb=AK061479
Os.59070: Oryza sativa Japonica Group cDNA, clone: J090069O18, full insert sequence /gb=AK288788
Os.9944: Oryza sativa Japonica Group cDNA clone:001-119-B10, full insert sequence /cds=p(195,965) /gb=AK063657
Pba.10516: WS01117.BR_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 5', mRNA sequence /clone=WS01117_L13 /clone_end=5' /gb=DT494199
Pba.3342: WS01226.BR.1_M06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_M06 5', mRNA sequence /clone=WS01226_M06 /clone_end=5' /gb=DT472454
Ppa.4847: Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_214078) mRNA, complete cds /cds=p(539,1291) /gb=XM_001767826
Pth.10516: WS01117.B21_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 3', mRNA sequence /clone=WS01117_L13 /clone_end=3' /gb=CV247299
Pth.15349: WS02510.B21_N18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02510_N18 3', mRNA sequence /clone=WS02510_N18 /clone_end=3' /gb=CV240968
Pth.16891: Populus trichocarpa clone WS0111_P17 unknown mRNA /cds=p(71,784) /gb=EF145076
Pth.3342: Populus trichocarpa clone WS0123_J18 unknown mRNA /cds=p(129,845) /gb=EF147581
Sbi.17390: GABR1_1_E04.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_1_E04_A002 5', mRNA sequence /clone=GABR1_1_E04_A002 /clone_end=5' /gb=CX612304 /gi=57811024
Vvi.5438: WIN1112.C21_A06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1112_A06 3', mRNA sequence /clone=WIN1112_A06 /clone_end=3' /gb=EC981152
Vvi.7588: WIN027.TB24.1_F24 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_F24 3', mRNA sequence /clone=WIN027_F24 /clone_end=3' /gb=EC924987

Domain	Start	End	Bit score	E-value
PHD	186	236	52.1	2.2e-12
Alfin-like	187	233	121.9	3e-36

protein sequence
transcript sequence

Gene model: GSVIVP00029300001

Identification

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Oryza sativa subsp. japonica

Sorghum bicolor

Zea mays

Expression data

Expressed Sequence Tags

Domain Architecture

Sequences