Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00029366001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00029366001
Family
SNF2
3D structure (top 5)
1WP9 3DMQ 2FWR 1Z3I 1Z5Z
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

351139 Score: 1

Arabidopsis thaliana

AT5G20420.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g49210.1 Score: 1

Populus trichocarpa

656302 Score: 1

Sorghum bicolor

4872321 Score: 1

Selaginella moellendorffii

441121 Score: 1

Zea mays

GRMZM2G108166_P01 Score: 1

Expression data

Expressed Sequence Tags

At.31185
Arabidopsis thaliana CHR42 (chromatin remodeling 42); ATP binding / DNA binding / helicase (CHR42) mRNA, complete cds /cds=p(1,3786) /gb=NM_122049
At.43953
Arabidopsis thaliana CHR38 (chromatin remodeling 38); ATP binding / DNA binding / helicase (CHR38) mRNA, complete cds /cds=p(1,3771) /gb=NM_114134

Domain Architecture

ResIII PF04851 GSVIVP00029366001
DomainStartEndBit scoreE-value
ResIII6348472.73.2e-05
SNF2_N64099112.41.9e-09
Helicase_C1060113954.44.4e-13

Sequences