Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00030933001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00030933001
Family
SNF2
3D structure (top 5)
1WP9 2FWR 1Z3I 3DMQ 1Z5Z
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

485847 Score: 1

Arabidopsis thaliana

AT3G54460.1 Score: 1

Cyanidioschyzon merolae

CMM245C Score: 1

Chlorella sp. NC64A

54357 Score: 1

Coccomyxa sp. C-169

83113 Score: 1

Micromonas sp. RCC299

96640 Score: 1

Ostreococcus lucimarinus

31894 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g72310.1 Score: 1

Ostreococcus tauri

33075 Score: 1

Physcomitrella patens

116197 Score: 1

Populus trichocarpa

800217 Score: 1

Sorghum bicolor

4754753 Score: 1

Selaginella moellendorffii

143427 Score: 1

Zea mays

GRMZM2G078364_P01 Score: 1

Expression data

Expressed Sequence Tags

At.44814
Arabidopsis thaliana SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (AT3G54460) mRNA, complete cds /cds=p(108,4244) /gb=NM_148874
Hv.22658
AV834811 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves adult, heading stage Hordeum vulgare subsp. spontaneum cDNA clone bah16m03, mRNA sequence /clone=bah16m03 /gb=AV834811
Os.34890
Oryza sativa Japonica Group cDNA clone:J033133G07, full insert sequence /gb=AK122134
Pba.2278
WS01920.C21_M14 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01920_M14 3', mRNA sequence /clone=WS01920_M14 /clone_end=3' /gb=DT470410
Pth.2278
WS01920.C21_M14 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01920_M14 3', mRNA sequence /clone=WS01920_M14 /clone_end=3' /gb=DT470410
Sbi.7368
IP1_22_A12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence /gb=BI075560
Vvi.4616
CAB2SG0004_IIbR_H04 Cabernet Sauvignon Berry - CAB2SG Vitis vinifera cDNA clone CAB2SG0004_IIbR_H04 3', mRNA sequence /clone=CAB2SG0004_IIbR_H04 /clone_end=3' /gb=CB348102

Domain Architecture

F-box PF00646 GSVIVP00030933001
DomainStartEndBit scoreE-value
F-box23528218.80.023
SNF2_N285939-15.47.6e-08
Helicase_C1144122137.55.4e-08

Sequences