Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00032140001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00032140001
Family
Sigma70-like
3D structure (top 5)
1SIG 1L0O 2A6H 1L9Z 1RP3
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

866812 Score: 1

Arabidopsis thaliana

AT3G53920.1 Score: 1

Micromonas pusilla CCMP1545

47508 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g51150.1 Score: 1

Physcomitrella patens

206687 Score: 1

Populus trichocarpa

819521 Score: 1

Zea mays

GRMZM2G170480_P02 Score: 1
GRMZM2G170480_P01 Score: 0.901

Expression data

Expressed Sequence Tags

Vvi.13669
WIN0535.C21_H19 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0535_H19 3', mRNA sequence /clone=WIN0535_H19 /clone_end=3' /gb=EC945680
Vvi.3374
CAB20005_IIIb_Fb_B07 Cabernet Sauvignon Flower bloom - CAB2 Vitis vinifera cDNA clone CAB20005_IIIb_Fb_B07 5', mRNA sequence /clone=CAB20005_IIIb_Fb_B07 /clone_end=5' /gb=CF209544

Domain Architecture

Sigma70_r2 PF04542 GSVIVP00032140001
DomainStartEndBit scoreE-value
Sigma70_r232739766.97.3e-17
Sigma70_r340148338.62.5e-08
Sigma70_r449554878.13.2e-20

Sequences