Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00032174001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00032174001
Family
MYB-related
3D structure (top 5)
2ELK 2ROH 1X41 2CU7 2DIM
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Vitis vinifera

GSVIVP00016585001 Score: 1
GSVIVP00032174001 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g09640.1 Score: 1
LOC_Os05g10690.1 Score: 1

Populus trichocarpa

763268 Score: 1

Expression data

Expressed Sequence Tags

At.23392
Arabidopsis thaliana myb family transcription factor (AT5G47390) mRNA, complete cds /cds=p(212,1309) /gb=NM_124110
At.29361
Arabidopsis thaliana DNA-binding family protein (AT5G56840) mRNA, complete cds /cds=p(97,798) /gb=NM_125067
Hv.180
Hordeum vulgare cv. Haisa mRNA for MCB2 protein /cds=p(78,863) /gb=AJ303355
Hv.6265
Hordeum vulgare mRNA for MYBSt1 protein /cds=p(1,945) /gb=AJ965496
Mtr.11848
EST1227574 MTY Medicago truncatula cDNA clone MTYB876, mRNA sequence /clone=MTYB876 /gb=DW018613
Mtr.14074
EST1226559 MTY Medicago truncatula cDNA clone MTYAV63, mRNA sequence /clone=MTYAV63 /gb=DW017598
Mtr.16497
EST1227431 MTY Medicago truncatula cDNA clone MTYB701, mRNA sequence /clone=MTYB701 /gb=DW018470
Mtr.3679
EST1224491 MTY Medicago truncatula cDNA clone MTYA640, mRNA sequence /clone=MTYA640 /gb=DW015530
Os.15138
Oryza sativa Japonica Group cDNA clone:J033128P13, full insert sequence /cds=p(226,1131) /gb=AK103432
Os.23087
Oryza sativa Japonica Group cDNA clone:J013029P13, full insert sequence /cds=p(1914,2777) /gb=AK065594
Ppa.6379
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168779) mRNA, complete cds /cds=p(393,1349) /gb=XM_001775204
Pth.10577
Populus trichocarpa clone WS01230_F05 unknown mRNA /cds=p(116,1054) /gb=EF147391
Vvi.1267
VV_PEd0010c02.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV239979
Vvi.23289
VV_PEd03f02.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241970

Domain Architecture

zf-CCHC PF00098 GSVIVP00032174001
DomainStartEndBit scoreE-value
zf-CCHC32017.90.00064
Myb_DNA-binding105152445.9e-10

Sequences