Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00032833001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00032833001
Family
SNF2
3D structure (top 5)
1Z5Z 1Z63 1WP9 2FWR 3DMQ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470924 Score: 1

Arabidopsis thaliana

AT1G08600.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g31970.1 Score: 1

Physcomitrella patens

20076 Score: 1

Populus trichocarpa

241484 Score: 1

Sorghum bicolor

4869378 Score: 1

Expression data

Expressed Sequence Tags

At.10206
Arabidopsis thaliana ATRX/CHR20; ATP binding / DNA binding / helicase (ATRX/CHR20) mRNA, complete cds /cds=p(1,4440) /gb=NM_100733
Os.50631
Oryza sativa Japonica Group cDNA clone:J013130J22, full insert sequence /gb=AK068079
Ppa.19617
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase domain-containing protein (CHR1547) mRNA, partial cds /cds=p(1,4311) /gb=XM_001758765
Vvi.3850
CA32EN0004_IIaF_D08 Cabernet Sauvignon Leaf - CA32EN Vitis vinifera cDNA clone CA32EN0004_IIaF_D08 5', mRNA sequence /clone=CA32EN0004_IIaF_D08 /clone_end=5' /gb=CB342999

Domain Architecture

SNF2_N PF00176 GSVIVP00032833001
DomainStartEndBit scoreE-value
SNF2_N343665274.42.5e-79
Helicase_C86594368.72.1e-17

Sequences