Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00034817001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00034817001
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487745 Score: 1

Arabidopsis thaliana

AT5G64060.1 Score: 1

Carica papaya

evm.TU.supercontig_42.143 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g35170.5 Score: 1

Populus trichocarpa

217043 Score: 1

Sorghum bicolor

4162250 Score: 1

Expression data

Expressed Sequence Tags

At.11394
Arabidopsis thaliana ANAC017 (Arabidopsis NAC domain containing protein 17); transcription factor (ANAC017) mRNA, complete cds /cds=p(279,1952) /gb=NM_103142
At.21933
Arabidopsis thaliana ANAC053 (Arabidopsis NAC domain containing protein 53); transcription factor (ANAC053) mRNA, complete cds /cds=p(229,1878) /gb=NM_111885
At.22852
Arabidopsis thaliana NAC2 (Arabidopsis NAC domain containing protein 78); transcription factor (NAC2) mRNA, complete cds /cds=p(223,1926) /gb=NM_120523
At.50553
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB63ZH11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX830168
Hv.23644
Hordeum vulgare subsp. vulgare mRNA for transcription factor, complete cds /cds=p(11,1306) /gb=AB362161
Hv.30589
HF01A04T HF Hordeum vulgare subsp. vulgare cDNA clone HF01A04 5-PRIME, mRNA sequence /clone=HF01A04 /clone_end=5' /gb=BQ463977
Hv.5295
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf28m08, mRNA sequence /gb=AK249396
Mtr.11148
EST590393 KV2 Medicago truncatula cDNA clone pKV2-53K1, mRNA sequence /clone=pKV2-53K1 /gb=BM779817
Mtr.13512
EST646405 HOGA Medicago truncatula cDNA clone HOGA-28O22, mRNA sequence /clone=HOGA-28O22 /gb=CB893613
Mtr.16222
EST506534 KV3 Medicago truncatula cDNA clone pKV3-38P17 5' end, mRNA sequence /clone=pKV3-38P17 /clone_end=5' /gb=BG644915
Mtr.6492
Medicago truncatula NAC1 (NAC1) mRNA, complete cds /cds=p(186,1415) /gb=AF254124
Os.12020
Oryza sativa Japonica Group cDNA clone:J013032G17, full insert sequence /cds=p(759,2108) /gb=AK099540
Os.93257
Oryza sativa Japonica Group cDNA clone:J013131L02, full insert sequence /gb=AK068153
Os.9354
Oryza sativa Japonica Group cDNA clone:J023008J18, full insert sequence /cds=p(84,2054) /gb=AK120773
Pth.3225
Populus trichocarpa clone WS01124_C05 unknown mRNA /cds=p(82,1404) /gb=EF145394
Sbi.17975
OX1_38_A01.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_38_A01_A002 5', mRNA sequence /clone=OX1_38_A01_A002 /clone_end=5' /gb=CN135689 /gi=45968055
Vvi.11133
SCB06674 Inflorescence with GA3 (VvS12) Vitis vinifera cDNA clone SCB06674, mRNA sequence /clone=SCB06674 /gb=EE108760
Vvi.20126
WIN0212.TB24_P19 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN0212_P19 3', mRNA sequence /clone=WIN0212_P19 /clone_end=3' /gb=EC926649

Domain Architecture

NAM PF02365 GSVIVP00034817001
DomainStartEndBit scoreE-value
NAM2114177.92.8e-50

Sequences