Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00035131001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00035131001
Family
C2H2
3D structure (top 5)
2CSH 2DLQ 2I13 2DMD 1TF6
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_2.82 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g45054.1 Score: 1

Populus trichocarpa

566362 Score: 1

Zea mays

GRMZM2G179677_P06 Score: 1
GRMZM2G179677_P02 Score: 0.985

Expression data

Expressed Sequence Tags

At.22283
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT3G45260) mRNA, complete cds /cds=p(149,1489) /gb=NM_114395
At.24519
Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds /cds=p(256,1659) /gb=AY091041
At.27643
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT5G66730) mRNA, complete cds /cds=p(520,2022) /gb=NM_126071
At.28709
Arabidopsis thaliana ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD11) mRNA, complete cds /cds=p(452,1993) /gb=NM_112234
At.37112
Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds /cds=p(91,1458) /gb=AY090998
At.42516
Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-40-M12 /cds=p(74,1594) /gb=AK227837
At.50264
Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08 /cds=p(536,1894) /gb=AK226933
At.8713
Arabidopsis thaliana NUC (NUTCRACKER); nucleic acid binding / transcription factor/ zinc ion binding (NUC) mRNA, complete cds /cds=p(151,1551) /gb=NM_123783
Mtr.22666
EST510375 HOGA Medicago truncatula cDNA clone pHOGA-23B12 5' end, mRNA sequence /clone=pHOGA-23B12 /clone_end=5' /gb=BG648756
Mtr.9921
MTYCV25TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV256295
Os.17568
Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence /gb=AK120603
Os.55091
Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence /gb=AK107468
Os.97953
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA204B21, full insert sequence /gb=CT832183
Ppa.18496
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_166815) mRNA, complete cds /cds=p(1,3060) /gb=XM_001770363
Ppa.2328
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168056) mRNA, complete cds /cds=p(1,3153) /gb=XM_001773598
Pth.8362
Populus trichocarpa clone WS01214_I21 unknown mRNA /cds=p(143,1456) /gb=EF146825
Vvi.19042
VVA018B11_54191 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVA018B11 5, mRNA sequence /clone=VVA018B11 /clone_end=5' /gb=BM437359

Domain Architecture

zf-C2H2 PF00096 GSVIVP00035131001
DomainStartEndBit scoreE-value
zf-C2H262826.10.00015
zf-C2H28210421.10.0046

Sequences