Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00035425001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00035425001
Family
C2H2
3D structure (top 5)
2GLI 1TF6 2I13 1UBD 2JP9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

489687 Score: 1

Arabidopsis thaliana

AT4G06634.1 Score: 1

Carica papaya

evm.TU.supercontig_161.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g34680.1 Score: 1

Populus trichocarpa

681001 Score: 1

Sorghum bicolor

4756567 Score: 1

Selaginella moellendorffii

35059 Score: 1

Zea mays

GRMZM2G165581_P01 Score: 1
GRMZM2G165581_P02 Score: 1

Expression data

Expressed Sequence Tags

At.47264
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT4G06634) mRNA, complete cds /cds=p(315,1364) /gb=NM_001036512
Mtr.11713
Medicago truncatula clone MTYFL_FM_FN_FO1G-E-11 unknown mRNA /cds=m(213,872) /gb=BT053012
Os.88427
Oryza sativa Japonica Group cDNA clone:J033143G04, full insert sequence /cds=p(305,1336) /gb=AK103760
Pba.11075
WS02546.C21.1_E08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_E08 3', mRNA sequence /clone=WS02546_E08 /clone_end=3' /gb=DT490902
Pth.11075
WS02546.C21.1_E08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_E08 3', mRNA sequence /clone=WS02546_E08 /clone_end=3' /gb=DT490902
Ptp.6027
R027F07 Populus root cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU885194
Vvi.5969
VV_PEa015b03.b1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence /gb=EV229500

Domain Architecture

zf-C2H2 PF00096 GSVIVP00035425001
DomainStartEndBit scoreE-value
zf-C2H27710125.50.00021
zf-C2H210613028.33e-05
zf-C2H213616033.77.4e-07
zf-C2H216619031.24.1e-06
zf-C2H222825326.89.1e-05

Sequences