Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00035919001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00035919001
Family
HB
3D structure (top 5)
2DMN 1B72 1PUF 1DU6 1LE8
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

912924 Score: 1

Arabidopsis thaliana

AT4G34610.1 Score: 1
AT4G34610.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g43950.1 Score: 1
LOC_Os12g43950.2 Score: 1
LOC_Os12g43950.3 Score: 1
LOC_Os12g43950.4 Score: 1

Populus trichocarpa

721939 Score: 1

Sorghum bicolor

5059881 Score: 1

Zea mays

GRMZM2G011588_P01 Score: 1
GRMZM2G011588_P03 Score: 1
GRMZM2G116600_P01 Score: 1
GRMZM2G116600_P03 Score: 1

Expression data

Expressed Sequence Tags

At.12624
Arabidopsis thaliana BLH4 (SAWTOOTH 2); DNA binding / transcription factor (BLH4) mRNA, complete cds /cds=p(261,2144) /gb=NM_179713
At.14305
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZE03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX820985
At.16254
Arabidopsis thaliana BLH3 (BLH3) mRNA, complete cds /cds=p(682,2256) /gb=NM_001084358
At.48946
Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds /cds=p(853,3072) /gb=AY050459
At.74048
Arabidopsis thaliana BLH7 (BELL1-LIKE HOMEODOMAIN 7); DNA binding / transcription factor (BLH7) mRNA, complete cds /cds=p(548,1996) /gb=NM_127194
At.74119
Arabidopsis thaliana clone 142443 mRNA, complete sequence /cds=p(28,1602) /gb=AY085278
Hv.12894
HVSMEg0016O14f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0016O14f, mRNA sequence /clone=HVSMEg0016O14f /gb=BG344928
Mtr.13534
NF004E06ST1F1000 Developing stem Medicago truncatula cDNA clone NF004E06ST 5', mRNA sequence /clone=NF004E06ST /clone_end=5' /gb=AW688195
Mtr.7013
AC4843 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY618467
Ptp.5611
G095P48.5pR Populus tension wood cDNA library Populus tremula x Populus tremuloides cDNA clone G095P48 5', mRNA sequence /clone=G095P48 /clone_end=5' /gb=DN493660
Sbi.14265
HS1_50_B01.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_50_B01_A012 5', mRNA sequence /clone=HS1_50_B01_A012 /clone_end=5' /gb=CD210350 /gi=30945366
Sbi.1439
WOUND1_26_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_26_C01_A002 5', mRNA sequence /clone=WOUND1_26_C01_A002 /clone_end=5' /gb=CN145056 /gi=45983936
Vvi.2355
WIN0513.C21_C10 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0513_C10 3', mRNA sequence /clone=WIN0513_C10 /clone_end=3' /gb=EC936665

Domain Architecture

POX PF07526 GSVIVP00035919001
DomainStartEndBit scoreE-value
POX173304250.44.3e-72
Homeobox3554135.20.0037

Sequences