Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00035957001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00035957001
Family
SWI/SNF-BAF60b
3D structure (top 5)
2BZE 1V32 1WH2 2Z5S 1UHR
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

906461 Score: 1

Arabidopsis thaliana

AT3G51120.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g66140.1 Score: 1

Populus trichocarpa

219537 Score: 1

Expression data

Expressed Sequence Tags

At.40269
Arabidopsis thaliana SWIB complex BAF60b domain-containing protein / plus-3 domain-containing protein (AT2G16480) mRNA, complete cds /cds=p(1,1152) /gb=NM_127201
Hv.25150
BJ471970 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three leaves Hordeum vulgare subsp. vulgare cDNA clone baal28n18 5', mRNA sequence /clone=baal28n18 /clone_end=5' /gb=BJ471970
Mtr.13307
EST647475 HOGA Medicago truncatula cDNA clone HOGA-32C15, mRNA sequence /clone=HOGA-32C15 /gb=CB894683
Os.78568
Oryza sativa (japonica cultivar-group) Os10g0511800 (Os10g0511800) mRNA, complete cds /cds=p(1,2118) /gb=NM_001071576
Os.86087
NEW_RNG123-D03 Rice mixture of leaf, root, panicle Oryza sativa (japonica cultivar-group) cDNA, mRNA sequence /gb=EE590805

Domain Architecture

SWIB PF02201 GSVIVP00035957001
DomainStartEndBit scoreE-value
SWIB31839388.91.8e-23
Plus-3457564164.92.4e-46
GYF804858353.1e-07

Sequences