Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00035978001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00035978001
Family
C3H
3D structure (top 5)
1VHN 1EP3 2H8Z 1Z41 1GTE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_150.6 Score: 1

Micromonas sp. RCC299

99494 Score: 1

Ostreococcus lucimarinus

86070 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g02730.1 Score: 1

Sorghum bicolor

4760333 Score: 1

Selaginella moellendorffii

89139 Score: 1

Expression data

Expressed Sequence Tags

At.31136
Arabidopsis thaliana dihydrouridine synthase family protein (AT4G38890) mRNA, complete cds /cds=p(1,2103) /gb=NM_120049
Hv.12164
HH04F04w HH Hordeum vulgare cDNA clone HH04F04 5-PRIME, mRNA sequence /clone=HH04F04 /clone_end=5' /gb=CB863303
Os.7618
Oryza sativa Japonica Group cDNA clone:J023009K15, full insert sequence /gb=AK111699
Ppa.4017
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_144788) mRNA, partial cds /cds=p(1,801) /gb=XM_001777252
Pth.16187
V018D12.5pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V018D12 5', mRNA sequence /clone=V018D12 /clone_end=5' /gb=DN501764
Ptp.8031
N058F07.3pR Populus bark cDNA library Populus tremula x Populus tremuloides cDNA clone N058F07 3', mRNA sequence /clone=N058F07 /clone_end=3' /gb=DN485987
Sbi.16982
FE1_17_C11.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_17_C11_A002 3', mRNA sequence /clone=FE1_17_C11_A002 /clone_end=3' /gb=CF071520 /gi=33108179

Domain Architecture

zf-CCCH PF00642 GSVIVP00035978001
DomainStartEndBit scoreE-value
zf-CCCH80109160.012
zf-CCCH1191475.40.3
Dus328622164.23.9e-46

Sequences