Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00036577001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00036577001
Family
SNF2
3D structure (top 5)
1Z3I 1Z5Z 1Z63 3DMQ 1WP9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

479436 Score: 1

Arabidopsis thaliana

AT3G19210.1 Score: 1

Chlorella sp. NC64A

136249 Score: 1

Carica papaya

evm.TU.supercontig_62.19 Score: 1

Chlamydomonas reinhardtii

206670 Score: 1

Coccomyxa sp. C-169

25945 Score: 1

Micromonas pusilla CCMP1545

17189 Score: 1

Micromonas sp. RCC299

60933 Score: 1

Ostreococcus lucimarinus

42731 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g52510.1 Score: 1

Ostreococcus tauri

18619 Score: 1

Physcomitrella patens

21176 Score: 1

Populus trichocarpa

267841 Score: 1

Selaginella moellendorffii

412612 Score: 1

Expression data

Expressed Sequence Tags

At.53386
Arabidopsis thaliana ATRAD54/CHR25 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding / helicase (ATRAD54/CHR25) mRNA, complete cds /cds=p(63,2795) /gb=NM_112808
Os.79999
Oryza sativa Japonica Group OsRad54 mRNA, complete cds /cds=p(139,3081) /gb=AB240577
Ppa.19674
CAYY22356.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY22356 5', mRNA sequence /clone=CAYY22356 /clone_end=5' /gb=FC344018

Domain Architecture

SNF2_N PF00176 GSVIVP00036577001
DomainStartEndBit scoreE-value
SNF2_N16322313.73.8e-91
Helicase_C388467814.2e-21

Sequences