Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00036931001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00036931001
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

476076 Score: 1

Arabidopsis thaliana

AT1G69490.1 Score: 1

Carica papaya

evm.TU.supercontig_1.49 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g03300.1 Score: 1

Populus trichocarpa

226369 Score: 1

Sorghum bicolor

148839 Score: 1

Zea mays

GRMZM2G042494_P01 Score: 1

Expression data

Expressed Sequence Tags

At.10430
Arabidopsis thaliana At1g61110 mRNA for unknown protein, complete cds, clone: RAFL19-05-K20 /cds=p(117,1088) /gb=AK117878
At.24919
Arabidopsis thaliana unknown protein (At1g69490) mRNA, complete cds /cds=p(94,900) /gb=AF360201
Hv.5097
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97a05, mRNA sequence /gb=AK251058
Hv.6550
Hordeum vulgare subsp. vulgare mRNA for putative NAC transcription factor (nac4 gene) /cds=p(156,992) /gb=AM500853
Mtr.13202
MTYEA18TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV260652
Mtr.14197
NF047H10EC1F1091 Elicited cell culture Medicago truncatula cDNA clone NF047H10EC 5', mRNA sequence /clone=NF047H10EC /clone_end=5' /gb=BF648589
Mtr.22324
EST315871 DSIR Medicago truncatula cDNA clone pDSIR-30G5, mRNA sequence /clone=pDSIR-30G5 /gb=AW560823
Os.17286
Oryza sativa Japonica Group cDNA, clone: J100075D15, full insert sequence /cds=p(172,1350) /gb=AK243514
Os.36437
Oryza sativa Japonica Group cDNA clone:001-115-A08, full insert sequence /gb=AK063406
Os.4384
Oryza sativa (japonica cultivar-group) NAC protein mRNA, complete cds /cds=p(105,1061) /gb=AY986504
Os.79631
Oryza sativa (japonica cultivar-group) Os12g0123700 (Os12g0123700) mRNA, complete cds /cds=p(1,1182) /gb=NM_001072566
Pba.1301
WS02538.B21_M23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_M23 3', mRNA sequence /clone=WS02538_M23 /clone_end=3' /gb=DT489286
Pba.7284
WS02532.B21_N07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_N07 3', mRNA sequence /clone=WS02532_N07 /clone_end=3' /gb=DT487120
Pba.7570
WS02529.BR_P23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02529_P23 5', mRNA sequence /clone=WS02529_P23 /clone_end=5' /gb=DT480809
Pth.1301
WS02538.B21_M23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_M23 3', mRNA sequence /clone=WS02538_M23 /clone_end=3' /gb=DT489286
Pth.7570
WS02529.BR_P23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02529_P23 5', mRNA sequence /clone=WS02529_P23 /clone_end=5' /gb=DT480809
Pth.8813
WS0256.B21_E09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0256_E09 3', mRNA sequence /clone=WS0256_E09 /clone_end=3' /gb=CV245020
Sbi.1157
RHOH1_8_B12.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_8_B12_A002 5', mRNA sequence /clone=RHOH1_8_B12_A002 /clone_end=5' /gb=CN125046 /gi=45949087
Vvi.350
EST 1003 Green Grape berries Lambda Zap II Library Vitis vinifera cDNA clone GB009G02 3', mRNA sequence /clone=GB009G02 /clone_end=3' /gb=BQ798834

Domain Architecture

NAM PF02365 GSVIVP00036931001
DomainStartEndBit scoreE-value
NAM9135312.86.9e-91

Sequences