Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00037541001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00037541001
Family
C2H2
3D structure (top 5)
1X5W 2GHF 1BBO 2ADR 2CTD
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os09g38790.3 Score: 1
LOC_Os09g38790.1 Score: 0.912
LOC_Os09g38790.2 Score: 0.912

Physcomitrella patens

87880 Score: 1

Sorghum bicolor

5051630 Score: 1

Selaginella moellendorffii

233860 Score: 1

Zea mays

GRMZM2G081812_P02 Score: 1

Expression data

Expressed Sequence Tags

At.25254
Arabidopsis thaliana putative zinc finger protein (At1g30970) mRNA, complete cds /cds=p(157,1260) /gb=AF360277
Hv.5193
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf137a02, mRNA sequence /gb=AK248180
Mtr.7529
EST641543 GPOD Medicago truncatula cDNA clone GPOD-36C19, mRNA sequence /clone=GPOD-36C19 /gb=CA917396
Os.8410
Oryza sativa Japonica Group cDNA clone:J013127D16, full insert sequence /cds=p(184,1251) /gb=AK067997
Pba.1121
WS0256.B21_M08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0256_M08 3', mRNA sequence /clone=WS0256_M08 /clone_end=3' /gb=CV245206
Pth.1121
WS0256.B21_M08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0256_M08 3', mRNA sequence /clone=WS0256_M08 /clone_end=3' /gb=CV245206
Pth.11843
WS0167.B21_P08 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_P08 3', mRNA sequence /clone=WS0167_P08 /clone_end=3' /gb=CV227700
Sbi.16178
HS1_46_D06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_46_D06_A012 5', mRNA sequence /clone=HS1_46_D06_A012 /clone_end=5' /gb=CD209203 /gi=30943064

Domain Architecture

zf-C2H2 PF00096 GSVIVP00037541001
DomainStartEndBit scoreE-value
zf-C2H2355820.20.0085

Sequences