Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00038887001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00038887001
Family
Alfin-like
3D structure (top 5)
2RI7 1WEP 1WE9 1WEU 1WEE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487363 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Carica papaya

evm.TU.supercontig_19.165 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g12910.1 Score: 1

Populus trichocarpa

560917 Score: 1

Sorghum bicolor

4999458 Score: 1

Zea mays

GRMZM2G111450_P01 Score: 1
GRMZM2G175293_P01 Score: 1

Expression data

Expressed Sequence Tags

At.27212
Arabidopsis thaliana PHD finger family protein (AT3G42790) mRNA, complete cds /cds=p(164,916) /gb=NM_114147
At.43821
Arabidopsis thaliana PHD finger family protein (AT5G05610) mRNA, complete cds /cds=p(163,888) /gb=NM_120643
Hv.10724
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf62e08, mRNA sequence /gb=AK250191
Mtr.10914
Medicago truncatula clone MTYF9_FA_FB_FC1G-I-4 unknown mRNA /cds=p(161,934) /gb=BT051954
Mtr.2273
EST1225172 MTY Medicago truncatula cDNA clone MTYAE43, mRNA sequence /clone=MTYAE43 /gb=DW016211
Mtr.2282
EST1224853 MTY Medicago truncatula cDNA clone MTYAA88, mRNA sequence /clone=MTYAA88 /gb=DW015892
Os.59070
Oryza sativa Japonica Group cDNA, clone: J090069O18, full insert sequence /gb=AK288788
Os.9944
Oryza sativa Japonica Group cDNA clone:001-119-B10, full insert sequence /cds=p(195,965) /gb=AK063657
Pba.10516
WS01117.BR_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 5', mRNA sequence /clone=WS01117_L13 /clone_end=5' /gb=DT494199
Pba.3342
WS01226.BR.1_M06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_M06 5', mRNA sequence /clone=WS01226_M06 /clone_end=5' /gb=DT472454
Ppa.4847
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_214078) mRNA, complete cds /cds=p(539,1291) /gb=XM_001767826
Pth.10516
WS01117.B21_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 3', mRNA sequence /clone=WS01117_L13 /clone_end=3' /gb=CV247299
Pth.15349
WS02510.B21_N18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02510_N18 3', mRNA sequence /clone=WS02510_N18 /clone_end=3' /gb=CV240968
Pth.16891
Populus trichocarpa clone WS0111_P17 unknown mRNA /cds=p(71,784) /gb=EF145076
Pth.3342
Populus trichocarpa clone WS0123_J18 unknown mRNA /cds=p(129,845) /gb=EF147581
Sbi.17390
GABR1_1_E04.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_1_E04_A002 5', mRNA sequence /clone=GABR1_1_E04_A002 /clone_end=5' /gb=CX612304 /gi=57811024
Vvi.19041
VVG032E06_757481 CabSau Cell Culture (CELu0001) Vitis vinifera cDNA clone VVG032E06 5, mRNA sequence /clone=VVG032E06 /clone_end=5' /gb=DT006283
Vvi.19056
WIN058.C21_B14 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN058_B14 3', mRNA sequence /clone=WIN058_B14 /clone_end=3' /gb=EC938930
Vvi.5438
WIN1112.C21_A06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1112_A06 3', mRNA sequence /clone=WIN1112_A06 /clone_end=3' /gb=EC981152
Vvi.7588
WIN027.TB24.1_F24 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_F24 3', mRNA sequence /clone=WIN027_F24 /clone_end=3' /gb=EC924987

Domain Architecture

Alfin-like Alfin-like GSVIVP00038887001
DomainStartEndBit scoreE-value
PHD18923952.12.2e-12
Alfin-like190236121.93e-36

Sequences