Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GSVIVP00038902001

Identification

Species:
Vitis vinifera
Gene model
GSVIVP00038902001
Family
HB
3D structure (top 5)
2DMN 1B72 1DU6 1PUF 1X2N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

482564 Score: 1

Arabidopsis thaliana

AT2G35940.1 Score: 1
AT2G35940.2 Score: 1
AT2G35940.3 Score: 1

Carica papaya

evm.TU.supercontig_104.22 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g06020.1 Score: 1

Physcomitrella patens

94284 Score: 1

Populus trichocarpa

256272 Score: 1

Sorghum bicolor

5056382 Score: 1

Zea mays

GRMZM2G158350_P01 Score: 1
GRMZM2G158350_P02 Score: 1
GRMZM2G158350_P03 Score: 1
GRMZM2G158350_P04 Score: 1
GRMZM2G158350_P05 Score: 1
GRMZM2G158350_P06 Score: 1

Expression data

Expressed Sequence Tags

At.48946
Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds /cds=p(853,3072) /gb=AY050459
At.50395
Arabidopsis thaliana BLH6 (BELL1-LIKE HOMEODOMAIN 5); DNA binding / transcription factor (BLH6) mRNA, complete cds /cds=p(325,1923) /gb=NM_119627
At.52933
Arabidopsis thaliana BLH5 (BELL1-LIKE HOMEODOMAIN 5); DNA binding / transcription factor (BLH5) mRNA, complete cds /cds=p(1,1296) /gb=NM_128280
At.69176
Arabidopsis thaliana At4g34610 gene, complete cds /cds=p(1,1599) /gb=BT012291
At.74048
Arabidopsis thaliana BLH7 (BELL1-LIKE HOMEODOMAIN 7); DNA binding / transcription factor (BLH7) mRNA, complete cds /cds=p(548,1996) /gb=NM_127194
Hv.12894
HVSMEg0016O14f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0016O14f, mRNA sequence /clone=HVSMEg0016O14f /gb=BG344928
Mtr.13534
NF004E06ST1F1000 Developing stem Medicago truncatula cDNA clone NF004E06ST 5', mRNA sequence /clone=NF004E06ST /clone_end=5' /gb=AW688195
Mtr.22349
META209TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474128
Os.11805
Oryza sativa (japonica cultivar-group) Os11g0158600 (Os11g0158600) mRNA, complete cds /cds=p(1,1278) /gb=NM_001072340
Os.27062
Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence /gb=AK287476
Os.7976
Oryza sativa Japonica Group cDNA clone:J023057H24, full insert sequence /gb=AK070543
Sbi.1439
WOUND1_26_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_26_C01_A002 5', mRNA sequence /clone=WOUND1_26_C01_A002 /clone_end=5' /gb=CN145056 /gi=45983936
Vvi.13945
S6B05581 Fruits 7-9 mm (VvS6) Vitis vinifera cDNA clone S6B05581, mRNA sequence /clone=S6B05581 /gb=EE089907
Vvi.6621
CAP0005_IF_G01 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0005_IF_G01 5', mRNA sequence /clone=CAP0005_IF_G01 /clone_end=5' /gb=CF517798

Domain Architecture

POX PF07526 GSVIVP00038902001
DomainStartEndBit scoreE-value
POX187319263.54.8e-76
Homeobox3684264.50.0043

Sequences