Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: Gs34780.1

Identification

Species:
Galdieria sulphuraria
Gene model
Gs34780.1
Description
ref|NP_001004396.1|__hypothetical protein LOC419956 [Gallus gallus] gb|AAR97520.1| zinc finger protein 183 [Gallus gallus] | Symbols: | zinc finger (CCCH-type/C3HC4-type RING finger) family protein | chr1:136732-139568 FORWARD 7222|protein RING finger pro
Family
C3H
3D structure (top 5)
2CSY 1Z6U 3FL2 1JM7 2F42
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.42654
Arabidopsis thaliana putative protein (At5g06420) mRNA, complete cds /cds=p(689,1825) /gb=AY136406
At.48142
Arabidopsis thaliana nucleic acid binding (AT1G01350) mRNA, complete cds /cds=p(177,1208) /gb=NM_100017
Os.6111
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018I20, full insert sequence /gb=CT831567
Pba.6847
WS02536.B21_E24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_E24 3', mRNA sequence /clone=WS02536_E24 /clone_end=3' /gb=DT488393
Ppa.8545
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_187995) mRNA, complete cds /cds=p(168,1175) /gb=XM_001769379
Pth.6847
WS02536.B21_E24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_E24 3', mRNA sequence /clone=WS02536_E24 /clone_end=3' /gb=DT488393

Domain Architecture

zf-CCCH PF00642 Gs34780.1
DomainStartEndBit scoreE-value
zf-CCCH16018641.82.8e-09
zf-C3HC422426226.30.0001

Sequences