Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: Gs51590.1

Identification

Species:
Galdieria sulphuraria
Gene model
Gs51590.1
Description
gb|AAK96710.1|__Unknown protein [Arabidopsis thaliana] gb|AAM47951.1| unknown protein [Arabidopsis thaliana] | Symbols: | zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr1:2260560-2262793 REVERSE
Family
C3H
3D structure (top 5)
2YTC 1X5U 1X4G 2CPD 1X4H
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.12692
Arabidopsis thaliana At2g29580/F16P2.4 mRNA, complete cds /cds=p(89,1540) /gb=AF428354
At.54760
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G07060) mRNA, complete cds /cds=p(1,1092) /gb=NM_120788
Hv.2670
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf68d17, mRNA sequence /gb=AK250256
Pba.5485
WS02550.C21_J17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02550_J17 3', mRNA sequence /clone=WS02550_J17 /clone_end=3' /gb=DT492399
Ppa.5833
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_185655) mRNA, complete cds /cds=p(227,1651) /gb=XM_001766453
Sbi.1193
CCC1_74_H12.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_74_H12_A007 5', mRNA sequence /clone=CCC1_74_H12_A007 /clone_end=5' /gb=CD221244 /gi=30964678
Vvi.19286
C1G03878 Mixture of buds, little clusters and fruits (C1) Vitis vinifera cDNA clone C1G03878, mRNA sequence /clone=C1G03878 /gb=EE062734

Domain Architecture

zf-CCCH PF00642 Gs51590.1
DomainStartEndBit scoreE-value
zf-CCCH16719213.80.023
RRM_1241306491.8e-11

Sequences