Gene model: LOC_Os01g01960.1

Species: Oryza sativa subsp. japonica Locus LOC_Os01g01960 Gene model LOC_Os01g01960.1 Description transcriptional repressor, putative, expressed Family Orphans 3D structure (top 5) 2F05 1E91 1G1E 2CR7 2CZY
	PDB entry: 2F05 1E91 1G1E 2CR7 2CZY

• Gramene
• Rice Genome Annotation Project - MSU

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

472680 Score: 1

Arabidopsis thaliana

AT1G24190.1 Score: 1

Carica papaya

evm.TU.supercontig_5.312 Score: 1

Coccomyxa sp. C-169

82606 Score: 1

Micromonas sp. RCC299

89424 Score: 1
55021 Score: 0.962

Ostreococcus lucimarinus

239 Score: 1

Physcomitrella patens

187128 Score: 1

Populus trichocarpa

230742 Score: 1

Sorghum bicolor

5001625 Score: 1

Selaginella moellendorffii

440352 Score: 1

Vitis vinifera

GSVIVP00028927001 Score: 1

Zea mays

GRMZM2G075320_P01 Score: 1

• MPSS data
• NCBI EST Profile Viewer (UniGene: At.36763)
• NCBI EST Profile Viewer (UniGene: At.42179)
• NCBI EST Profile Viewer (UniGene: At.47999)
• NCBI EST Profile Viewer (UniGene: Hv.20879)
• NCBI EST Profile Viewer (UniGene: Hv.22733)
• NCBI EST Profile Viewer (UniGene: Mtr.19146)
• NCBI EST Profile Viewer (UniGene: Mtr.22578)
• NCBI EST Profile Viewer (UniGene: Os.24859)
• NCBI EST Profile Viewer (UniGene: Os.47430)
• NCBI EST Profile Viewer (UniGene: Os.6597)
• NCBI EST Profile Viewer (UniGene: Os.82929)
• NCBI EST Profile Viewer (UniGene: Pba.9038)
• NCBI EST Profile Viewer (UniGene: Pth.9038)
• NCBI EST Profile Viewer (UniGene: Sbi.109)
• NCBI EST Profile Viewer (UniGene: Sbi.13185)

At.36763

Arabidopsis thaliana paired amphipathic helix repeat-containing protein (AT1G59890) mRNA, complete cds /cds=p(365,3844) /gb=NM_104681

At.42179

Arabidopsis thaliana paired amphipathic helix repeat-containing protein (AT1G10450) mRNA, complete cds /cds=p(1,3522) /gb=NM_100919

At.47999

Arabidopsis thaliana ATSIN3/SIN3 (Arabidopsis thaliana sin3 homolog) (ATSIN3/SIN3) mRNA, complete cds /cds=p(1,4062) /gb=NM_102265

Hv.20879

HVSMEf0012G18f Hordeum vulgare seedling root EST library HVcDNA0007 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEf0012G18f, mRNA sequence /clone=HVSMEf0012G18f /gb=BF257282

Hv.22733

HVSMEi0004O19f Hordeum vulgare 20 DAP spike EST library HVcDNA0010 (20 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEi0004O19f, mRNA sequence /clone=HVSMEi0004O19f /gb=BG366036

Mtr.19146

EST1226444 MTY Medicago truncatula cDNA clone MTYAU20, mRNA sequence /clone=MTYAU20 /gb=DW017483

Mtr.22578

EST531015 GPOD Medicago truncatula cDNA clone pGPOD-13H13 5' end, mRNA sequence /clone=pGPOD-13H13 /clone_end=5' /gb=BI309605

Os.24859

RECm0702 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone BI074E17, EI109E08, BI128P15 5', mRNA sequence /clone=BI074E17,_EI109E08,_BI128P15 /clone_end=5' /gb=CX099928

Os.47430

Oryza sativa Japonica Group cDNA clone:J023096A15, full insert sequence /gb=AK071466

Os.6597

Oryza sativa Japonica Group cDNA clone:J033007H10, full insert sequence /cds=p(4,3981) /gb=AK121497

Os.82929

22441rsicee_8238.y1 Oryza sativa cv. LYP9 tillering whole plant cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence /clone_end=5' /gb=CF989805

Pba.9038

WS02521.B21_F17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02521_F17 3', mRNA sequence /clone=WS02521_F17 /clone_end=3' /gb=DT482995

Pth.9038

WS02521.B21_F17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02521_F17 3', mRNA sequence /clone=WS02521_F17 /clone_end=3' /gb=DT482995

Sbi.109

Sorghum bicolor mRNA for pSbaNS5 protein /cds=p(14,721) /gb=Y09874

Sbi.13185

EM1_7_B07.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence /gb=BG158002

protein sequence
transcript sequence