Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os01g08970.2

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os01g08970
Gene model
LOC_Os01g08970.2
Description
SSRP1-like FACT complex subunit, putative, expressed
Family
HMG
3D structure (top 5)
2GCL 2EQZ 2CO9 1K99 1GT0
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.21931
Arabidopsis thaliana ATHMG (HIGH MOBILITY GROUP); transcription factor (ATHMG) mRNA, complete cds /cds=p(66,2006) /gb=NM_113794
Hv.28942
HDP40L07w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP40L07, mRNA sequence /clone=HDP40L07 /gb=EX585945
Os.54219
Oryza sativa Japonica Group cDNA clone:J033098G02, full insert sequence /gb=AK102592
Os.7840
Oryza sativa Japonica Group cDNA clone:J013075A09, full insert sequence /cds=p(206,2131) /gb=AK066832
Sbi.3622
HS1_65_G09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_65_G09_A012 5', mRNA sequence /clone=HS1_65_G09_A012 /clone_end=5' /gb=CD207493 /gi=30939605
Vvi.11694
VV_PEa04d10.b2 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence /gb=EV228763

Domain Architecture

SSrecog PF03531 LOC_Os01g08970.2
DomainStartEndBit scoreE-value
SSrecog1123295303e-156
Rtt106252396206.47.8e-59
HMG_box450518891.7e-23

Sequences