Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os01g15300.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os01g15300
Gene model
LOC_Os01g15300.1
Description
zinc finger helicase family protein, putative, expressed
Family
C3H
3D structure (top 5)
1GM5 2J0S 3FMO 1HEI 3FMP
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

483950 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15300.1 Score: 1
LOC_Os01g15300.2 Score: 0.954

Arabidopsis thaliana

AT2G47680.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15300.1 Score: 1
LOC_Os01g15300.2 Score: 0.955

Carica papaya

evm.TU.supercontig_9.260 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15300.1 Score: 1
LOC_Os01g15300.2 Score: 1

Sorghum bicolor

143132 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15300.1 Score: 1
LOC_Os01g15300.2 Score: 0.907

Selaginella moellendorffii

173103 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15300.1 Score: 1
LOC_Os01g15300.2 Score: 0.966

Vitis vinifera

GSVIVP00027989001 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15300.1 Score: 1
LOC_Os01g15300.2 Score: 0.951

Zea mays

GRMZM2G146047_P02 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15300.1 Score: 1
LOC_Os01g15300.2 Score: 0.914

Expression data

Expressed Sequence Tags

At.36329
Arabidopsis thaliana zinc finger (CCCH type) helicase family protein (AT2G47680) mRNA, complete cds /cds=p(35,3082) /gb=NM_130336
Hv.6919
AV836863 K. Sato unpublished cDNA library: Hordeum vulgare subsp. vulgare seedling leaves second leaf stage Hordeum vulgare subsp. vulgare cDNA clone basdi12, mRNA sequence /clone=basdi12 /gb=AV836863
Os.49825
Oryza sativa Japonica Group cDNA clone:J023078K23, full insert sequence /gb=AK100311
Pth.17511
Populus trichocarpa clone WS0128_O12 /gb=EF148229

Domain Architecture

Helicase_C PF00271 LOC_Os01g15300.1
DomainStartEndBit scoreE-value
Helicase_C28838037.64.9e-08
zf-CCCH724749277.6e-05
zf-CCCH751777240.00062

Sequences