Gene model: LOC_Os01g15300.1

Species: Oryza sativa subsp. japonica Locus LOC_Os01g15300 Gene model LOC_Os01g15300.1 Description zinc finger helicase family protein, putative, expressed Family C3H 3D structure (top 5) 1GM5 2J0S 3FMO 1HEI 3FMP
	PDB entry: 1GM5 2J0S 3FMO 1HEI 3FMP 1WP9 1S2M 1HV8 2JLQ 2V1X 2OCA 1XTI 2Z0M 1CU1 3EIQ 2V6I 2DB3 1OYW 1YKS 2Z83 2I4I 2VA8 2EYQ 2ZJ8 1FUU 3FHT 2VBC 2P6R 2FWR 2PL3 3BER 3BOR 1WRB 2GXQ 1T6N 2OXC 3FE2 1Q0U 1VEC 3DKP 1QDE 3DMQ 2JGN 2RB4 3EAQ 2HJV 1FUK 2P6N 1Z3I 1Z63 1T5I 1RIF 2W00 1C4O 3B6E 3CRV 2FZ4 2FSF 2VL7 1TF5 3DIN 2VSF 1NKT 2IPC 3E1S 1W36 2D9N 1Z5Z 3CPE 2CQE

• Gramene
• Rice Genome Annotation Project - MSU

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

483950 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15300.1 Score: 1
LOC_Os01g15300.2 Score: 0.954

Arabidopsis thaliana

AT2G47680.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15300.1 Score: 1
LOC_Os01g15300.2 Score: 0.955

Carica papaya

evm.TU.supercontig_9.260 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15300.1 Score: 1
LOC_Os01g15300.2 Score: 1

Sorghum bicolor

143132 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15300.1 Score: 1
LOC_Os01g15300.2 Score: 0.907

Selaginella moellendorffii

173103 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15300.1 Score: 1
LOC_Os01g15300.2 Score: 0.966

Vitis vinifera

GSVIVP00027989001 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15300.1 Score: 1
LOC_Os01g15300.2 Score: 0.951

Zea mays

GRMZM2G146047_P02 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15300.1 Score: 1
LOC_Os01g15300.2 Score: 0.914

• MPSS data
• NCBI EST Profile Viewer (UniGene: At.36329)
• NCBI EST Profile Viewer (UniGene: Hv.6919)
• NCBI EST Profile Viewer (UniGene: Os.49825)
• NCBI EST Profile Viewer (UniGene: Pth.17511)

At.36329

Arabidopsis thaliana zinc finger (CCCH type) helicase family protein (AT2G47680) mRNA, complete cds /cds=p(35,3082) /gb=NM_130336

Hv.6919

AV836863 K. Sato unpublished cDNA library: Hordeum vulgare subsp. vulgare seedling leaves second leaf stage Hordeum vulgare subsp. vulgare cDNA clone basdi12, mRNA sequence /clone=basdi12 /gb=AV836863

Os.49825

Oryza sativa Japonica Group cDNA clone:J023078K23, full insert sequence /gb=AK100311

Pth.17511

Populus trichocarpa clone WS0128_O12 /gb=EF148229

protein sequence
transcript sequence