Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os01g15460.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os01g15460
Gene model
LOC_Os01g15460.1
Description
zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Family
C3H
3D structure (top 5)
1M9O 2RPP 2E5S 2RHK 2CQE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

904260 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15460.1 Score: 1
LOC_Os01g15460.2 Score: 1
LOC_Os01g15460.3 Score: 0.961

Arabidopsis thaliana

AT2G47850.1 Score: 1
AT2G47850.3 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15460.1 Score: 1
LOC_Os01g15460.2 Score: 1
LOC_Os01g15460.3 Score: 0.961

Populus trichocarpa

229700 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15460.3 Score: 1
LOC_Os01g15460.1 Score: 0.99
LOC_Os01g15460.2 Score: 0.99

Sorghum bicolor

4797888 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15460.3 Score: 1
LOC_Os01g15460.1 Score: 0.97
LOC_Os01g15460.2 Score: 0.97

Vitis vinifera

GSVIVP00023577001 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15460.3 Score: 1
LOC_Os01g15460.1 Score: 0.989
LOC_Os01g15460.2 Score: 0.989

Zea mays

GRMZM2G036837_P01 Score: 1
GRMZM2G036837_P02 Score: 1
GRMZM2G036837_P03 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15460.1 Score: 1
LOC_Os01g15460.2 Score: 1

Expression data

Expressed Sequence Tags

Os.9029
Oryza sativa Japonica Group cDNA clone:J033073E09, full insert sequence /cds=p(298,1698) /gb=AK073920
Os.9931
Oryza sativa Japonica Group cDNA clone:J013116H24, full insert sequence /cds=p(333,1727) /gb=AK111633
Vvi.8684
WIN1149.C21_O06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1149_O06 3', mRNA sequence /clone=WIN1149_O06 /clone_end=3' /gb=EC993939

Domain Architecture

zf-CCCH PF00642 LOC_Os01g15460.1
DomainStartEndBit scoreE-value
zf-CCCH608643.96.3e-10
zf-CCCH10913541.82.7e-09
zf-CCCH15418043.86.6e-10
zf-CCCH308334461.4e-10
zf-CCCH35438039.11.8e-08

Sequences