Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os01g40670.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os01g40670
Gene model
LOC_Os01g40670.1
Description
single myb histone, putative, expressed
Family
MYB-related
3D structure (top 5)
1UST 1HST 1UHM 1USS 1GHC
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

474123 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g40670.1 Score: 1
LOC_Os01g40670.2 Score: 0.965

Arabidopsis thaliana

AT1G49950.1 Score: 1
AT1G49950.2 Score: 1
AT1G49950.3 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g40670.1 Score: 1
LOC_Os01g40670.2 Score: 0.965

Carica papaya

evm.TU.supercontig_6.10 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g40670.1 Score: 1
LOC_Os01g40670.2 Score: 1

Sorghum bicolor

4752357 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g40670.1 Score: 1
LOC_Os01g40670.2 Score: 0.938

Selaginella moellendorffii

413266 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g40670.1 Score: 1
LOC_Os01g40670.2 Score: 1

Zea mays

GRMZM2G087817_P02 Score: 1
GRMZM2G087817_P03 Score: 0.925

Oryza sativa subsp. japonica

LOC_Os01g40670.1 Score: 1
LOC_Os01g40670.2 Score: 0.931

Expression data

Expressed Sequence Tags

Hv.13178
HWM021cF.03r ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM021cF.03, mRNA sequence /clone=HWM021cF.03 /gb=BE422212
Mtr.17478
METB235TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY477379
Mtr.7648
META350TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474260
Os.8369
Oryza sativa Japonica Group cDNA clone:J033117F01, full insert sequence /gb=AK103040
Sbi.9613
WOUND1_39_E08.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_39_E08_A002 5', mRNA sequence /clone=WOUND1_39_E08_A002 /clone_end=5' /gb=CN146348 /gi=45986221
Vvi.8843
WIN0517.C21_L21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0517_L21 3', mRNA sequence /clone=WIN0517_L21 /clone_end=3' /gb=EC939798

Domain Architecture

Myb_DNA-binding PF00249 LOC_Os01g40670.1
DomainStartEndBit scoreE-value
Myb_DNA-binding55735.42.2e-07
Linker_histone13019333.83.3e-07

Sequences