Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os01g46700.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os01g46700
Gene model
LOC_Os01g46700.1
Description
SET domain containing protein, expressed
Family
SET
3D structure (top 5)
3BO5 1ML9 1MVH 2R3A 2RFI
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Sorghum bicolor

4752761 Score: 1

Zea mays

GRMZM2G170412_P01 Score: 1

Expression data

Expressed Sequence Tags

Hv.28779
HDP28P14T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP28P14, mRNA sequence /clone=HDP28P14 /gb=EX593775
Os.25567
CT852400 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCPI028K19, mRNA sequence /clone=OSIGCPI028K19 /gb=CT852400
Os.50353
Oryza sativa Japonica Group cDNA clone:J023020K07, full insert sequence /gb=AK120836
Os.61243
85491rsicen_28045.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence /clone_end=5' /gb=CK084752
Os.83166
60172rsicek_2918.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence /clone_end=5' /gb=CK059258
Pba.1904
WS0232.B21_L14 PT-MB-A-13 Populus trichocarpa cDNA clone WS0232_L14 3', mRNA sequence /clone=WS0232_L14 /clone_end=3' /gb=CV239535
Pth.12969
F033P65.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F033P65 3', mRNA sequence /clone=F033P65 /clone_end=3' /gb=CK090938
Pth.13471
WS0162.B21_F01 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_F01 3', mRNA sequence /clone=WS0162_F01 /clone_end=3' /gb=CV225758
Sbi.18943
POL1_8_F09.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_8_F09_A002 5', mRNA sequence /clone=POL1_8_F09_A002 /clone_end=5' /gb=CF482729 /gi=34511598
Vvi.19260
VVI069F03_593334 CabSau Flower Stage 12 (FLOu0012) Vitis vinifera cDNA clone VVI069F03 5, mRNA sequence /clone=VVI069F03 /clone_end=5' /gb=DT021747
Vvi.21312
WIN1115.C21_N03 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1115_N03 3', mRNA sequence /clone=WIN1115_N03 /clone_end=3' /gb=EC982390

Domain Architecture

SET PF00856 LOC_Os01g46700.1
DomainStartEndBit scoreE-value
SET867997170.25.9e-48

Sequences