Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os01g55430.2

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os01g55430
Gene model
LOC_Os01g55430.2
Description
OsFBT2 - F-box and tubby domain containing protein, expressed
Family
TUB
3D structure (top 5)
2FIM 3C5N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.24299
Arabidopsis thaliana AtTLP7 (TUBBY LIKE PROTEIN 7); phosphoric diester hydrolase/ transcription factor (AtTLP7) mRNA, complete cds /cds=p(76,1215) /gb=NM_104210
Hv.1211
HWM000.F05 ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM000.F05, mRNA sequence /clone=HWM000.F05 /gb=BE420604
Mtr.13388
META224TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474143
Os.10160
Oryza sativa (japonica cultivar-group) Os05g0514300 (Os05g0514300) mRNA, complete cds /cds=p(246,1364) /gb=NM_001062568
Os.22785
Oryza sativa Japonica Group cDNA clone:J023048A08, full insert sequence /cds=p(114,1184) /gb=AK070401
Os.31726
Oryza sativa Japonica Group cDNA clone:002-118-B03, full insert sequence /cds=p(68,1174) /gb=AK106853
Os.80328
Oryza sativa (japonica cultivar-group) Os05g0560400 (Os05g0560400) mRNA, complete cds /cds=p(1,1059) /gb=NM_001062843

Domain Architecture

F-box PF00646 LOC_Os01g55430.2
DomainStartEndBit scoreE-value
F-box49104170.077
Tub115364280.44.1e-81

Sequences