Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os02g08310.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os02g08310
Gene model
LOC_Os02g08310.1
Description
tubby, putative, expressed
Family
TUB
3D structure (top 5)
2FIM 3C5N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

471808 Score: 1

Arabidopsis thaliana

AT1G16070.1 Score: 1
AT1G16070.2 Score: 0.988

Populus trichocarpa

178195 Score: 1

Sorghum bicolor

4000312 Score: 1

Selaginella moellendorffii

33752 Score: 1

Zea mays

GRMZM2G136820_P01 Score: 1
GRMZM2G170739_P01 Score: 1

Expression data

Expressed Sequence Tags

At.41903
Arabidopsis thaliana AtTLP8 (TUBBY LIKE PROTEIN 8) (AtTLP8) mRNA, complete cds /cds=p(118,1314) /gb=NM_001035976
Os.76033
CR278501 Oryza sativa library (Han B) Oryza sativa cDNA clone p705d05p3, mRNA sequence /clone=p705d05p3 /gb=CR278501

Domain Architecture

Tub PF01167 LOC_Os02g08310.1
DomainStartEndBit scoreE-value
Tub163412-32.65.7e-08

Sequences