Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os02g19880.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os02g19880
Gene model
LOC_Os02g19880.1
Description
conserved hypothetical protein
Family
Rcd1-like
3D structure (top 5)
2FV2
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.19618
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS20ZA01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX830756
At.48685
Arabidopsis thaliana putative cell differentiation protein (At3g20800) mRNA, complete cds /cds=p(48,998) /gb=AY091082
Cre.2378
Chlamydomonas reinhardtii Rcd1-like protein (RCD1) mRNA, complete cds /cds=p(291,1190) /gb=XM_001694007
Hv.13912
AL508730 Hordeum vulgare Barke developing caryopsis (3.-15.DAP) Hordeum vulgare subsp. vulgare cDNA clone HY09K03V 5', mRNA sequence /clone=HY09K03 /clone_end=5' /gb=AL508730
Hv.24291
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf165j19, mRNA sequence /gb=AK252610
Mtr.12183
MEUBB21TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=GE347784
Os.31773
Oryza sativa Japonica Group cDNA clone:002-115-H08, full insert sequence /gb=AK106782
Os.33061
Oryza sativa Japonica Group cDNA clone:J033071K05, full insert sequence /gb=AK101921
Os.76830
Oryza sativa Japonica Group cDNA, clone: J075183G10, full insert sequence /gb=AK242259
Ppa.3625
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_224039) mRNA, complete cds /cds=p(1,870) /gb=XM_001780269
Ppa.6891
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_203554) mRNA, complete cds /cds=p(249,1127) /gb=XM_001754879
Sbi.11721
DG1_126_D12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence /gb=BE356585
Vca.9646
CBOX15769.rev CBOX Volvox carteri f. nagariensis induced female Eve, 2kb Volvox carteri f. nagariensis cDNA clone CBOX15769 3', mRNA sequence /clone=CBOX15769 /clone_end=3' /gb=FD910124

Domain Architecture

Rcd1 PF04078 LOC_Os02g19880.1
DomainStartEndBit scoreE-value
Rcd117279482.17.6e-142

Sequences