Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os02g44930.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os02g44930
Gene model
LOC_Os02g44930.1
Description
HMG1/2, putative, expressed
Family
HMG
3D structure (top 5)
1GT0 2CS1 3F27 2E6O 2EQZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Sorghum bicolor

5004741 Score: 1

Vitis vinifera

GSVIVP00003430001 Score: 1

Zea mays

GRMZM2G013821_P01 Score: 1
GRMZM2G013821_P02 Score: 1

Expression data

Expressed Sequence Tags

Hv.9107
HWM019cD.05r ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM019cD.05, mRNA sequence /clone=HWM019cD.05 /gb=BE422049
Os.7523
RECm2519 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone EI108G02, BI129K12 5', mRNA sequence /clone=EI108G02,_BI129K12 /clone_end=5' /gb=CX101560

Domain Architecture

HMG_box PF00505 LOC_Os02g44930.1
DomainStartEndBit scoreE-value
HMG_box33102107.35.3e-29

Sequences