Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os02g46780.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os02g46780
Gene model
LOC_Os02g46780.1
Description
MYB family transcription factor, putative, expressed
Family
MYB
3D structure (top 5)
2K9N 1GV2 1H89 1H8A 2JUH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

477086 Score: 1

Arabidopsis thaliana

AT1G16490.1 Score: 1

Zea mays

GRMZM2G039557_P01 Score: 1

Expression data

Expressed Sequence Tags

At.10900
53-L021131-065-005-E07-SeLB MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 005-E07, mRNA sequence /clone=005-E07 /gb=DR750471
At.10919
Arabidopsis thaliana AtMYB72/MYB72 (myb domain protein 72); DNA binding / transcription factor (AtMYB72/MYB72) mRNA, complete cds /cds=p(1,891) /gb=NM_104495
At.42352
Arabidopsis thaliana ATMYB13 (myb domain protein 13); DNA binding / transcription factor (ATMYB13) mRNA, complete cds /cds=p(103,843) /gb=NM_100499
At.5394
Arabidopsis thaliana AtMIXTA/AtMYB16 (myb domain protein 16); DNA binding / transcription factor (AtMIXTA/AtMYB16) mRNA, complete cds /cds=p(224,1204) /gb=NM_121535
At.9932
Arabidopsis thaliana AtMYB9 (myb domain protein 9); DNA binding (AtMYB9) mRNA, complete cds /cds=p(326,1336) /gb=NM_203063
Hv.26413
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf180h20, mRNA sequence /gb=AK248651
Hv.27175
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178a22, mRNA sequence /gb=AK248649
Hv.4463
HC114B11_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone HC114B11_SK.ab1 similar to myb protein homolog - rice gi|1946265|emb|CAA72217.1| (Y11414) myb [Oryza sativa], mRNA sequence /clone=HC114B11_SK.ab1 /gb=BM816803
Mtr.19694
EST1224335 MTY Medicago truncatula cDNA clone MTYA430, mRNA sequence /clone=MTYA430 /gb=DW015374
Mtr.4790
EST1227002 MTY Medicago truncatula cDNA clone MTYB151, mRNA sequence /clone=MTYB151 /gb=DW018041
Os.10172
CT857440 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCRN106M14, mRNA sequence /clone=OSIGCRN106M14 /gb=CT857440
Os.3387
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107G14, full insert sequence /gb=CT834744
Os.47854
Oryza sativa Japonica Group cDNA clone:J023030I19, full insert sequence /gb=AK111720
Os.84391
Oryza sativa Japonica Group cDNA clone:001-031-D02, full insert sequence /gb=AK111960
Sbi.3364
WOUND1_65_D11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_65_D11_A002 5', mRNA sequence /clone=WOUND1_65_D11_A002 /clone_end=5' /gb=CN149909 /gi=45991895
Vvi.12591
CAbud0005_IF_G09 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0005_IF_G09 5', mRNA sequence /clone=CAbud0005_IF_G09 /clone_end=5' /gb=CF512901

Domain Architecture

Myb_DNA-binding PF00249 LOC_Os02g46780.1
DomainStartEndBit scoreE-value
Myb_DNA-binding166352.31.8e-12
Myb_DNA-binding6911439.91e-08

Sequences