Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os02g50630.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os02g50630
Gene model
LOC_Os02g50630.1
Description
E2F family transcription factor protein, putative, expressed
Family
E2F-DP
3D structure (top 5)
1CF7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

485177 Score: 1

Arabidopsis thaliana

AT3G48160.2 Score: 1

Carica papaya

evm.TU.supercontig_35.31 Score: 1

Physcomitrella patens

231478 Score: 1

Populus trichocarpa

570039 Score: 1

Sorghum bicolor

4979574 Score: 1

Selaginella moellendorffii

421405 Score: 1

Vitis vinifera

GSVIVP00020855001 Score: 1

Zea mays

GRMZM2G078867_P01 Score: 1

Expression data

Expressed Sequence Tags

Hv.28959
HDP12L12w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP12L12, mRNA sequence /clone=HDP12L12 /gb=EX590291
Os.47376
Oryza sativa Japonica Group cDNA clone:J013041C09, full insert sequence /gb=AK111537
Os.50197
Oryza sativa Japonica Group cDNA clone:002-186-D11, full insert sequence /gb=AK120032
Sbi.8440
RHOH1_46_B03.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_46_B03_A002 5', mRNA sequence /clone=RHOH1_46_B03_A002 /clone_end=5' /gb=CN131200 /gi=45960401

Domain Architecture

E2F_TDP PF02319 LOC_Os02g50630.1
DomainStartEndBit scoreE-value
E2F_TDP54119107.74e-29
E2F_TDP199279112.71.2e-30

Sequences