Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os02g54200.2

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os02g54200
Gene model
LOC_Os02g54200.2
Description
mitochondrial transcription termination factor family protein, putative, expressed
Family
mTERF

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

903808 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g54200.1 Score: 1
LOC_Os02g54200.2 Score: 1

Arabidopsis thaliana

AT2G44020.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g54200.1 Score: 1
LOC_Os02g54200.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g54200.1 Score: 1
LOC_Os02g54200.2 Score: 1

Carica papaya

evm.TU.supercontig_151.13 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g54200.1 Score: 1
LOC_Os02g54200.2 Score: 1

Populus trichocarpa

678072 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g54200.1 Score: 1
LOC_Os02g54200.2 Score: 1

Sorghum bicolor

4810168 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g54200.1 Score: 1
LOC_Os02g54200.2 Score: 1

Vitis vinifera

GSVIVP00016568001 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g54200.1 Score: 1
LOC_Os02g54200.2 Score: 1

Zea mays

GRMZM2G000610_P01 Score: 1
GRMZM2G000610_P02 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g54200.1 Score: 1
LOC_Os02g54200.2 Score: 1

Expression data

Expressed Sequence Tags

At.19499
Arabidopsis thaliana mitochondrial transcription termination factor-related / mTERF-related (AT2G44020) mRNA, complete cds /cds=p(126,1649) /gb=NM_129964
At.71899
BX836749 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis thaliana cDNA clone GSLTFB14ZA04 3PRIM, mRNA sequence /clone=GSLTFB14ZA04 /clone_end=3' /gb=BX836749
Mtr.13237
EST640968 GPOD Medicago truncatula cDNA clone GPOD-34C21, mRNA sequence /clone=GPOD-34C21 /gb=CA916821
Mtr.21674
MEUA346TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=GE343632
Os.35826
Oryza sativa Japonica Group cDNA clone:002-103-E12, full insert sequence /gb=AK064154
Os.4917
Oryza sativa Japonica Group cDNA clone:J033108O14, full insert sequence /cds=p(57,1583) /gb=AK102821
Os.87537
CT859713 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCRA111N18, mRNA sequence /clone=OSIGCRA111N18 /gb=CT859713
Vvi.20573
WIN0525.C21_N01 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0525_N01 3', mRNA sequence /clone=WIN0525_N01 /clone_end=3' /gb=EC942443

Domain Architecture

mTERF PF02536 LOC_Os02g54200.2
DomainStartEndBit scoreE-value
mTERF87435381.21.9e-111

Sequences