Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os03g16430.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os03g16430
Gene model
LOC_Os03g16430.1
Description
RNA polymerase sigma factor, putative, expressed
Family
Sigma70-like
3D structure (top 5)
1RP3 1SIG 1L0O 1L9Z 2A6H
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Chlorella sp. NC64A

35462 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g16430.1 Score: 1.011
LOC_Os03g16430.2 Score: 1

Carica papaya

evm.TU.supercontig_73.28 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g16430.1 Score: 1.012
LOC_Os03g16430.2 Score: 1

Coccomyxa sp. C-169

44246 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g16430.1 Score: 1.01
LOC_Os03g16430.2 Score: 1

Micromonas sp. RCC299

100150 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g16430.1 Score: 1.012
LOC_Os03g16430.2 Score: 1
LOC_Os11g26160.1 Score: 1

Ostreococcus lucimarinus

41331 Score: 1

Ostreococcus tauri

18021 Score: 1

Sorghum bicolor

4779347 Score: 1

Selaginella moellendorffii

117159 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g16430.1 Score: 1.012
LOC_Os03g16430.2 Score: 1

Vitis vinifera

GSVIVP00022983001 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g16430.1 Score: 1.013
LOC_Os03g16430.2 Score: 1

Zea mays

GRMZM2G003182_P01 Score: 1
GRMZM2G090783_P01 Score: 1
GRMZM2G100086_P01 Score: 1
GRMZM2G164084_P01 Score: 1

Expression data

Expressed Sequence Tags

At.23349
Arabidopsis thaliana sigma factor 2 (SIG2) mRNA, nuclear gene encoding chloroplast protein, complete cds /cds=p(15,1739) /gb=AF015543
Hv.20577
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf170f11, mRNA sequence /gb=AK252843
Hv.27771
BJ481686 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah61h18 5', mRNA sequence /clone=bah61h18 /clone_end=5' /gb=BJ481686
Mtr.9120
EST457795 DSIL Medicago truncatula cDNA clone pDSIL-23E14, mRNA sequence /clone=pDSIL-23E14 /gb=BF520325
Os.27006
J001F01 Oryza sativa mature leaf library induced by M.grisea Oryza sativa cDNA clone J001F01, mRNA sequence /clone=J001F01 /gb=BI810206
Os.28459
Oryza sativa Japonica Group cDNA clone:J013054G24, full insert sequence /gb=AK066099
Os.88896
Oryza sativa Japonica Group cDNA clone:001-034-B01, full insert sequence /cds=p(243,1865) /gb=AK060821

Domain Architecture

Sigma70_r2 PF04542 LOC_Os03g16430.1
DomainStartEndBit scoreE-value
Sigma70_r230337370.56.3e-18
Sigma70_r337745887.54.9e-23
Sigma70_r447052388.13.1e-23

Sequences