Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os03g18480.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os03g18480
Gene model
LOC_Os03g18480.1
Description
MYB family transcription factor, putative, expressed
Family
MYB
3D structure (top 5)
2K9N 1GV2 1H89 1H8A 2JUH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

484622 Score: 1

Arabidopsis thaliana

AT3G28470.1 Score: 1

Populus trichocarpa

798952 Score: 1

Vitis vinifera

GSVIVP00020833001 Score: 1

Zea mays

GRMZM2G006832_P01 Score: 1
GRMZM2G095649_P01 Score: 1

Expression data

Expressed Sequence Tags

At.10904
Arabidopsis thaliana AtMYB35 (myb domain protein 35); DNA binding / transcription factor (AtMYB35) mRNA, complete cds /cds=p(1,954) /gb=NM_113767
At.50533
Arabidopsis thaliana ATMYB103/ATMYB80/MS188/MYB103 (MYB DOMAIN PROTEIN 80); DNA binding / transcription factor (ATMYB103/ATMYB80/MS188/MYB103) mRNA, complete cds /cds=p(1,963) /gb=NM_124993
At.5394
Arabidopsis thaliana AtMIXTA/AtMYB16 (myb domain protein 16); DNA binding / transcription factor (AtMIXTA/AtMYB16) mRNA, complete cds /cds=p(224,1204) /gb=NM_121535
At.9932
Arabidopsis thaliana AtMYB9 (myb domain protein 9); DNA binding (AtMYB9) mRNA, complete cds /cds=p(326,1336) /gb=NM_203063
Hv.21408
H.vulgare myb1 mRNA /cds=p(212,1015) /gb=X70877
Hv.26842
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97l09, mRNA sequence /gb=AK248579
Mtr.19694
EST1224335 MTY Medicago truncatula cDNA clone MTYA430, mRNA sequence /clone=MTYA430 /gb=DW015374
Mtr.9208
Medicago truncatula clone MTYF9_FA_FB_FC1G-F-10 unknown mRNA /cds=m(91,948) /gb=BT052056
Os.10175
Oryza sativa (japonica cultivar-group) Os05g0429900 (Os05g0429900) mRNA, partial cds /cds=p(527,847) /gb=NM_001062156
Os.3390
O.sativa mRNA for myb factor, 1355 bp /cds=p(116,1222) /gb=Y11415
Os.58166
Oryza sativa (japonica cultivar-group) Os04g0470600 (Os04g0470600) mRNA, complete cds /cds=p(1,1119) /gb=NM_001059587
Os.7125
CT851199 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCRN116P12, mRNA sequence /clone=OSIGCRN116P12 /gb=CT851199
Os.78787
Oryza sativa (japonica cultivar-group) Os06g0221000 (Os06g0221000) mRNA, complete cds /cds=p(1,969) /gb=NM_001063709
Os.80847
Oryza sativa Japonica Group cDNA, clone: J090031E07, full insert sequence /gb=AK288415
Sbi.2545
OX1_61_A11.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_61_A11_A002 5', mRNA sequence /clone=OX1_61_A11_A002 /clone_end=5' /gb=CN138063 /gi=45972186
Sbi.8066
WOUND1_59_F10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_59_F10_A002 5', mRNA sequence /clone=WOUND1_59_F10_A002 /clone_end=5' /gb=CN148942 /gi=45990343
Vvi.20893
WIN114.C21_B15 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN114_B15 3', mRNA sequence /clone=WIN114_B15 /clone_end=3' /gb=EC980203
Vvi.3225
CAB30005_Ib_Fb_C02 Cabernet Sauvignon Berry Stage I - CAB3 Vitis vinifera cDNA clone CAB30005_Ib_Fb_C02 5', mRNA sequence /clone=CAB30005_Ib_Fb_C02 /clone_end=5' /gb=CB974921

Domain Architecture

Myb_DNA-binding PF00249 LOC_Os03g18480.1
DomainStartEndBit scoreE-value
Myb_DNA-binding146149.81.1e-11
Myb_DNA-binding6711253.77e-13

Sequences