Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os03g20910.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os03g20910
Gene model
LOC_Os03g20910.1
Description
homeobox domain containing protein, expressed
Family
HB
3D structure (top 5)
2CUF 2R5Y 1B8I 1NK2 2E1O
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_73.3 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g20910.1 Score: 1
LOC_Os03g20910.2 Score: 1

Populus trichocarpa

571283 Score: 1
571284 Score: 1

Sorghum bicolor

5030003 Score: 1

Zea mays

GRMZM2G016800_P01 Score: 1
GRMZM2G067003_P02 Score: 1
GRMZM2G162481_P02 Score: 1
GRMZM2G016800_P02 Score: 0.97

Oryza sativa subsp. japonica

LOC_Os03g20910.1 Score: 1
LOC_Os03g20910.2 Score: 1

Expression data

Expressed Sequence Tags

Os.51648
Oryza sativa Japonica Group cDNA clone:001-113-A08, full insert sequence /gb=AK063262
Os.51714
Oryza sativa Japonica Group cDNA clone:J033021B15, full insert sequence /cds=p(106,894) /gb=AK073232

Domain Architecture

Homeobox PF00046 LOC_Os03g20910.1
DomainStartEndBit scoreE-value
Homeobox3910046.97.6e-11

Sequences