Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os03g22800.3

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os03g22800
Gene model
LOC_Os03g22800.3
Description
OsFBT5 - F-box and tubby domain containing protein, expressed
Family
TUB
3D structure (top 5)
2FIM 3C5N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.17482
Arabidopsis thaliana AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor (AtTLP1) mRNA, complete cds /cds=p(211,1578) /gb=NM_179563
At.18294
Arabidopsis thaliana AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor (AtTLP6) mRNA, complete cds /cds=p(273,1514) /gb=NM_103621
At.23717
Arabidopsis thaliana AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor (AtTLP10) mRNA, complete cds /cds=p(578,1915) /gb=NM_102338
At.27566
Arabidopsis thaliana putative tubby protein (At2g47900) mRNA, complete cds /cds=p(455,1675) /gb=AY074273
At.31402
Arabidopsis thaliana mRNA for tub family-like protein, clone: RAFL14-43-C05 /gb=AK227861
Mtr.4196
MTGland_A059_2007-06-22/MTGlandA059_C03_014_1 Medicago truncatula A17 glandular trichome Medicago truncatula cDNA, mRNA sequence /gb=EX529819
Os.12718
Oryza sativa Japonica Group cDNA clone:J033089L13, full insert sequence /gb=AK102298
Os.15216
Oryza sativa Japonica Group cDNA clone:J033133A18, full insert sequence /cds=p(348,1685) /gb=AK103583
Os.18696
Oryza sativa Japonica Group cDNA clone:J033087L15, full insert sequence /gb=AK102221
Os.21061
Oryza sativa (japonica cultivar-group) Os07g0667000 (Os07g0667000) mRNA, complete cds /cds=p(247,1467) /gb=NM_001067107
Os.27120
Oryza sativa Japonica Group cDNA clone:J023001B21, full insert sequence /gb=AK120706
Os.51217
Oryza sativa Japonica Group cDNA clone:J033074D16, full insert sequence /gb=AK101936
Os.61163
Oryza sativa Japonica Group cDNA clone:J033091L01, full insert sequence /cds=p(199,894) /gb=AK102370
Ppa.17533
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_190792) mRNA, complete cds /cds=p(1,1287) /gb=XM_001772550
Ppa.2119
CAYZ20400.fwd CAYZ Physcomitrella patens subsp. patens Villersexel - regular (L) Physcomitrella patens subsp. patens cDNA clone CAYZ20400 5', mRNA sequence /clone=CAYZ20400 /clone_end=5' /gb=FC394890
Ppa.6169
CAYZ9906.fwd CAYZ Physcomitrella patens subsp. patens Villersexel - regular (L) Physcomitrella patens subsp. patens cDNA clone CAYZ9906 5', mRNA sequence /clone=CAYZ9906 /clone_end=5' /gb=FC430515
Ppa.6953
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_221905) mRNA, complete cds /cds=p(1,1278) /gb=XM_001777454
Pth.11141
Populus trichocarpa clone WS01217_E07 unknown mRNA /cds=p(196,1374) /gb=EF146852
Pth.4669
Populus trichocarpa clone WS0115_J02 unknown mRNA /cds=p(226,1497) /gb=EF146106

Domain Architecture

Tub PF01167 LOC_Os03g22800.3
DomainStartEndBit scoreE-value
Tub2225300.24.3e-87

Sequences