Gene model: LOC_Os03g31594.1

Species: Oryza sativa subsp. japonica Locus LOC_Os03g31594 Gene model LOC_Os03g31594.1 Description jmjC domain containing protein, expressed Family Jumonji

• Gramene
• Rice Genome Annotation Project - MSU

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

471347 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g31594.2 Score: 1
LOC_Os03g31594.1 Score: 0.994

Arabidopsis thaliana

AT1G11950.1 Score: 1
AT1G62310.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g58210.2 Score: 1
LOC_Os03g31594.1 Score: 1
LOC_Os03g31594.2 Score: 1
LOC_Os02g58210.1 Score: 0.995

Carica papaya

evm.TU.supercontig_707.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g31594.2 Score: 1
LOC_Os03g31594.1 Score: 0.994

Chlamydomonas reinhardtii

142903 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g31594.1 Score: 1
LOC_Os03g31594.2 Score: 1

Physcomitrella patens

154856 Score: 1
200454 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g58210.1 Score: 1
LOC_Os03g31594.1 Score: 1
LOC_Os03g31594.2 Score: 1
LOC_Os02g58210.2 Score: 0.994

Zea mays

GRMZM2G025658_P01 Score: 1
GRMZM2G115717_P01 Score: 0.905

Oryza sativa subsp. japonica

LOC_Os03g31594.1 Score: 1
LOC_Os03g31594.2 Score: 0.986

• MPSS data
• NCBI EST Profile Viewer (UniGene: At.18334)
• NCBI EST Profile Viewer (UniGene: At.36279)
• NCBI EST Profile Viewer (UniGene: At.42102)
• NCBI EST Profile Viewer (UniGene: Hv.4909)
• NCBI EST Profile Viewer (UniGene: Mtr.22381)
• NCBI EST Profile Viewer (UniGene: Os.18195)
• NCBI EST Profile Viewer (UniGene: Os.50915)
• NCBI EST Profile Viewer (UniGene: Os.6505)
• NCBI EST Profile Viewer (UniGene: Os.82084)
• NCBI EST Profile Viewer (UniGene: Ppa.19248)
• NCBI EST Profile Viewer (UniGene: Ppa.20723)
• NCBI EST Profile Viewer (UniGene: Ppa.6739)
• NCBI EST Profile Viewer (UniGene: Vvi.11982)
• NCBI EST Profile Viewer (UniGene: Vvi.4830)

At.18334

Arabidopsis thaliana IBM1 (INCREASE IN BONSAI METHYLATION 1); histone demethylase(H3-K9 specific) / transcription factor (IBM1) mRNA, complete cds /cds=p(1,3084) /gb=NM_111640

At.36279

Arabidopsis thaliana transcription factor jumonji (jmjC) domain-containing protein (AT1G62310) mRNA, complete cds /cds=p(1,2652) /gb=NM_104911

At.42102

Arabidopsis thaliana transcription factor (AT1G11950) mRNA, complete cds /cds=p(1,2628) /gb=NM_101067

Hv.4909

BJ484812 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah56d17 3', mRNA sequence /clone=bah56d17 /clone_end=3' /gb=BJ484812

Mtr.22381

METAL93TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY475949

Os.18195

Oryza sativa Japonica Group cDNA clone:J033020J08, full insert sequence /gb=AK073195

Os.50915

Oryza sativa Japonica Group cDNA clone:001-028-A06, full insert sequence /cds=p(115,1254) /gb=AK059445

Os.6505

Oryza sativa Japonica Group cDNA clone:001-023-A12, full insert sequence /gb=AK059145

Os.82084

T9 Water-deficit induced fragments in rice seminal root tips Oryza sativa cDNA clone T9, mRNA sequence /clone=T9 /gb=CB238462

Ppa.19248

Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_118936) mRNA, partial cds /cds=p(1,1998) /gb=XM_001757080

Ppa.20723

Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_154856) mRNA, complete cds /cds=p(1,2082) /gb=XM_001785065

Ppa.6739

Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_200454) mRNA, complete cds /cds=p(181,2250) /gb=XM_001784865

Vvi.11982

CAP0006_IVR_F05 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0006_IVR_F05 3', mRNA sequence /clone=CAP0006_IVR_F05 /clone_end=3' /gb=CF519154

Vvi.4830

CAB2SG0004_IaR_D10 Cabernet Sauvignon Berry - CAB2SG Vitis vinifera cDNA clone CAB2SG0004_IaR_D10 3', mRNA sequence /clone=CAB2SG0004_IaR_D10 /clone_end=3' /gb=CB348379

protein sequence
transcript sequence