Gene model: LOC_Os03g47970.1

Species: Oryza sativa subsp. japonica Locus LOC_Os03g47970 Gene model LOC_Os03g47970.1 Description GATA transcription factor 25, putative, expressed Family C2C2-GATA 3D structure (top 5) 3DFX 4GAT 2VUT 1GNF 2KAE
	PDB entry: 3DFX 4GAT 2VUT 1GNF 2KAE

• Gramene
• Rice Genome Annotation Project - MSU

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Physcomitrella patens

16797 Score: 1
232610 Score: 1
57561 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g05510.1 Score: 1
LOC_Os03g47970.1 Score: 1
LOC_Os06g48534.1 Score: 1

Sorghum bicolor

147227 Score: 1

• MPSS data
• NCBI EST Profile Viewer (UniGene: At.20286)
• NCBI EST Profile Viewer (UniGene: At.26180)
• NCBI EST Profile Viewer (UniGene: Hv.13890)
• NCBI EST Profile Viewer (UniGene: Hv.29865)
• NCBI EST Profile Viewer (UniGene: Mtr.17775)
• NCBI EST Profile Viewer (UniGene: Mtr.3624)
• NCBI EST Profile Viewer (UniGene: Os.13666)
• NCBI EST Profile Viewer (UniGene: Os.2857)
• NCBI EST Profile Viewer (UniGene: Os.6390)
• NCBI EST Profile Viewer (UniGene: Pba.1091)
• NCBI EST Profile Viewer (UniGene: Ppa.14095)
• NCBI EST Profile Viewer (UniGene: Ppa.2077)
• NCBI EST Profile Viewer (UniGene: Ppa.20898)
• NCBI EST Profile Viewer (UniGene: Pth.1091)
• NCBI EST Profile Viewer (UniGene: Sbi.8133)
• NCBI EST Profile Viewer (UniGene: Sbi.9485)
• NCBI EST Profile Viewer (UniGene: Vvi.12431)

At.20286

Arabidopsis thaliana ZML1 (ZIM-LIKE 1); transcription factor (ZML1) mRNA, complete cds /cds=p(197,1090) /gb=NM_113012

At.26180

Arabidopsis thaliana ZML2 (ZIM-LIKE 2); transcription factor (ZML2) mRNA, complete cds /cds=p(468,1376) /gb=NM_104038

Hv.13890

HDP39O07w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP39O07, mRNA sequence /clone=HDP39O07 /gb=EX578864

Hv.29865

EBro02_SQ007_M02_R root, 3 week, hydroponic grown, low nitrogen, cv Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone EBro02_SQ007_M02 5', mRNA sequence /clone=EBro02_SQ007_M02 /clone_end=5' /gb=BQ763093

Mtr.17775

EST529614 GPOD Medicago truncatula cDNA clone pGPOD-2M18 5' end, mRNA sequence /clone=pGPOD-2M18 /clone_end=5' /gb=BI308204

Mtr.3624

EST644617 GESD Medicago truncatula cDNA clone GESD-31N14, mRNA sequence /clone=GESD-31N14 /gb=CA991109

Os.13666

Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence /gb=AK288076

Os.2857

Oryza sativa Japonica Group cDNA clone:001-011-G08, full insert sequence /gb=AK105025

Os.6390

Oryza sativa Japonica Group cDNA clone:J023003E02, full insert sequence /cds=p(50,1036) /gb=AK068931

Pba.1091

WS0257.B21_C20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0257_C20 3', mRNA sequence /clone=WS0257_C20 /clone_end=3' /gb=CV245349

Ppa.14095

Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_145290) mRNA, complete cds /cds=p(1,903) /gb=XM_001777694

Ppa.2077

Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_57561) mRNA, complete cds /cds=p(1,1188) /gb=XM_001764571

Ppa.20898

CAYY32031.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY32031 5', mRNA sequence /clone=CAYY32031 /clone_end=5' /gb=FC359782

Pth.1091

WS0257.B21_C20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0257_C20 3', mRNA sequence /clone=WS0257_C20 /clone_end=3' /gb=CV245349

Sbi.8133

WOUND1_44_C09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_44_C09_A002 3', mRNA sequence /clone=WOUND1_44_C09_A002 /clone_end=3' /gb=CN146834 /gi=45987018

Sbi.9485

WOUND1_74_H08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_74_H08_A002 3', mRNA sequence /clone=WOUND1_74_H08_A002 /clone_end=3' /gb=CN151258 /gi=45994237

Vvi.12431

S1G03364 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G03364, mRNA sequence /clone=S1G03364 /gb=EE076015

protein sequence
transcript sequence