Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os03g51690.2

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os03g51690
Gene model
LOC_Os03g51690.2
Description
Homeobox domain containing protein, expressed
Family
HB
3D structure (top 5)
2DMN 1B72 1X2N 1PUF 1DU6
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

489727 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g51690.1 Score: 1
LOC_Os03g51690.2 Score: 1

Arabidopsis thaliana

AT4G08150.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g51690.1 Score: 1
LOC_Os03g51690.2 Score: 1

Sorghum bicolor

4741523 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g51690.1 Score: 1
LOC_Os03g51690.2 Score: 1

Vitis vinifera

GSVIVP00015017001 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g51690.1 Score: 1
LOC_Os03g51690.2 Score: 1

Expression data

Expressed Sequence Tags

At.10801
Arabidopsis thaliana STM (SHOOT MERISTEMLESS); transcription factor (STM) mRNA, complete cds /cds=p(1,1149) /gb=NM_104916
At.26286
Arabidopsis thaliana clone RAFL14-89-I21 (R20256) putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds /cds=p(160,1143) /gb=BT002930
At.28060
Arabidopsis thaliana KNAT1 (BREVIPEDICELLUS 1); transcription factor (KNAT1) mRNA, complete cds /cds=p(357,1553) /gb=NM_116884
Hv.105
Hordeum vulgare knotted class 1 homeodomain protein (k) mRNA, complete cds /cds=p(96,1190) /gb=AF022390
Hv.12878
Hordeum vulgare knotted 1 (kn1) mRNA, complete cds /cds=p(35,1084) /gb=AF544045
Hv.26993
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126d22, mRNA sequence /gb=AK248600
Mtr.121
Medicago truncatula knotted class I homeodomain KNOX mRNA, complete cds /cds=p(10,1155) /gb=AF308454
Mtr.17576
Medicago truncatula class I KNOX homeobox transcription factor (KNOX6) mRNA, complete cds /cds=p(165,1103) /gb=EF128061
Mtr.7182
Medicago truncatula class I KNOX homeobox transcription factor (KNOX2) mRNA, partial cds /cds=p(1,868) /gb=EF128057
Os.151
Oryza sativa Japonica Group OSH1 mRNA for homeobox protein, complete cds /cds=p(1065,2150) /gb=D16507
Os.1855
Oryza sativa mRNA for knotted1-type homeobox protein OSH3, complete cds /cds=p(461,1564) /gb=AB028882
Os.4163
Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence /gb=AK241312
Os.57551
Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds /cds=p(299,1324) /gb=AB028884
Pth.17230
WS01223.B21_N06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01223_N06 3', mRNA sequence /clone=WS01223_N06 /clone_end=3' /gb=CV236360
Pth.3282
Populus trichocarpa clone WS01119_M04 unknown mRNA /cds=p(151,1008) /gb=EF144909
Ptp.6550
T022A11.3pR Populus shoot meristem cDNA library Populus tremula x Populus tremuloides cDNA clone T022A11 3', mRNA sequence /clone=T022A11 /clone_end=3' /gb=DN489302
Sbi.13097
Sorghum bicolor KNOTTED1 homeodomain protein (KN1) mRNA, partial cds /cds=p(1,1044) /gb=DQ317417
Vvi.16658
VV_PEd0017e09.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241384
Vvi.8600
WIN027.TB24.1_E07 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_E07 3', mRNA sequence /clone=WIN027_E07 /clone_end=3' /gb=EC924955

Domain Architecture

KNOX1 PF03790 LOC_Os03g51690.2
DomainStartEndBit scoreE-value
KNOX110214695.42e-25
KNOX21532041045.2e-28
ELK242263377.7e-08
Homeobox265324-10.015

Sequences