Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os03g52000.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os03g52000
Gene model
LOC_Os03g52000.1
Description
BSD domain containing protein, expressed
Family
BSD
3D structure (top 5)
1X3A
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

471202 Score: 1

Arabidopsis thaliana

AT5G65910.1 Score: 1

Carica papaya

evm.TU.supercontig_129.77 Score: 1

Physcomitrella patens

159259 Score: 1

Populus trichocarpa

571988 Score: 1

Sorghum bicolor

5048217 Score: 1

Selaginella moellendorffii

152998 Score: 1

Vitis vinifera

GSVIVP00014983001 Score: 1

Expression data

Expressed Sequence Tags

Hv.9660
RUS32D03w HB (Hordeum vulgare cv. Barke) Hordeum vulgare subsp. vulgare cDNA clone HB07F01, mRNA sequence /clone=HB07F01 /gb=FD518853
Os.57822
Oryza sativa Japonica Group cDNA, clone: J090058A01, full insert sequence /cds=p(91,1632) /gb=AK242793
Sbi.17477
RHOH1_10_E02.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_10_E02_A002 5', mRNA sequence /clone=RHOH1_10_E02_A002 /clone_end=5' /gb=CN125372 /gi=45949759
Sbi.7812
RHOH1_38_A07.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_38_A07_A002 3', mRNA sequence /clone=RHOH1_38_A07_A002 /clone_end=3' /gb=CN129873 /gi=45957953

Domain Architecture

BSD PF03909 LOC_Os03g52000.1
DomainStartEndBit scoreE-value
BSD30736770.65.7e-18

Sequences