Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os04g39140.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os04g39140
Gene model
LOC_Os04g39140.1
Description
acetyltransferase, GNAT family, putative, expressed
Family
GNAT
3D structure (top 5)
1TIQ 2OB0
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

889946 Score: 1

Arabidopsis thaliana

AT1G24040.1 Score: 1
AT1G24040.2 Score: 1

Chlamydomonas reinhardtii

143224 Score: 1

Coccomyxa sp. C-169

73135 Score: 1

Populus trichocarpa

564771 Score: 1

Sorghum bicolor

5057336 Score: 1

Selaginella moellendorffii

428677 Score: 1

Vitis vinifera

GSVIVP00028884001 Score: 1

Zea mays

GRMZM2G057554_P01 Score: 1
GRMZM2G057554_P02 Score: 1
GRMZM2G073972_P01 Score: 1
GRMZM2G073972_P02 Score: 1

Expression data

Expressed Sequence Tags

Os.52258
Oryza sativa (japonica cultivar-group) Os04g0465500 (Os04g0465500) mRNA, complete cds /cds=p(89,1039) /gb=NM_001059560
Sbi.8667
WOUND1_72_B02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_72_B02_A002 3', mRNA sequence /clone=WOUND1_72_B02_A002 /clone_end=3' /gb=CN150873 /gi=45993552

Domain Architecture

Acetyltransf_1 PF00583 LOC_Os04g39140.1
DomainStartEndBit scoreE-value
Acetyltransf_115127125.10.00029

Sequences