Plant Transcription factor database - Universität Potsdam

version: 3.0

Gene model: LOC_Os04g44670.1

Identification

Species: Oryza sativa subsp. japonica Locus LOC_Os04g44670 Gene model LOC_Os04g44670.1 Description AP2 domain containing protein, expressed Family AP2-EREBP 3D structure (top 5) 1GCC
	PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

Ortholog identification by INPARANOID

Arabidopsis lyrata

900468 Score: 1

Sorghum bicolor

5042232 Score: 1

Zea mays

GRMZM2G026926_P01 Score: 1
GRMZM2G102425_P01 Score: 1

Expression data

Expressed Sequence Tags

At.27216: Arabidopsis thaliana AP2 domain-containing transcription factor, putative (AT2G20880) mRNA, complete cds /cds=p(81,1091) /gb=NM_127658
Os.81053: Oryza sativa (japonica cultivar-group) Os04g0529100 (Os04g0529100) mRNA, complete cds /cds=p(96,1229) /gb=NM_001059914
Os.81656: Oryza sativa Japonica Group cDNA, clone: J090094O16, full insert sequence /gb=AK242986

Domain Architecture

LOC_Os04g44670.1

Domain	Start	End	Bit score	E-value
AP2	213	264	81.1	4e-21

Sequences

protein sequence
transcript sequence