Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os04g48030.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os04g48030
Gene model
LOC_Os04g48030.1
Description
heat stress transcription factor B-1, putative, expressed
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Zea mays

GRMZM2G000439_P01 Score: 1
GRMZM2G001407_P01 Score: 1

Expression data

Expressed Sequence Tags

At.5365
Arabidopsis thaliana HSF4 (HEAT SHOCK FACTOR 4); DNA binding / transcription factor (HSF4) mRNA, complete cds /cds=p(484,1338) /gb=NM_119862
Mtr.10591
EST1225248 MTY Medicago truncatula cDNA clone MTYAF37, mRNA sequence /clone=MTYAF37 /gb=DW016287
Mtr.8663
Medicago truncatula clone MTYFL_FM_FN_FO1G-M-13 unknown mRNA /cds=p(142,1221) /gb=BT053195
Os.27176
Oryza sativa Japonica Group cDNA clone:J033029F08, full insert sequence /gb=AK101182
Os.27716
Oryza sativa (japonica cultivar-group) Os08g0546800 (Os08g0546800) mRNA, complete cds /cds=p(6,1856) /gb=NM_001068958
Os.50642
Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds /cds=p(122,988) /gb=AY344483

Domain Architecture

HSF_DNA-bind PF00447 LOC_Os04g48030.1
DomainStartEndBit scoreE-value
HSF_DNA-bind9213159.11.3e-44

Sequences