Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os04g53540.2

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os04g53540
Gene model
LOC_Os04g53540.2
Description
homeobox and START domains containing protein, putative, expressed
Family
HB
3D structure (top 5)
1FJL 1PUF 1B72 2DMT 1B8I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_8.217 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g53540.1 Score: 1
LOC_Os04g53540.2 Score: 1
LOC_Os04g53540.3 Score: 1

Populus trichocarpa

830518 Score: 1
834933 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g53540.1 Score: 1
LOC_Os04g53540.2 Score: 1
LOC_Os04g53540.3 Score: 1
LOC_Os04g53540.4 Score: 1

Vitis vinifera

GSVIVP00026038001 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g53540.1 Score: 1
LOC_Os04g53540.2 Score: 1
LOC_Os04g53540.3 Score: 1
LOC_Os04g53540.4 Score: 1

Zea mays

GRMZM2G001289_P02 Score: 1
GRMZM2G122897_P01 Score: 1
GRMZM2G001289_P01 Score: 0.941

Oryza sativa subsp. japonica

LOC_Os04g53540.1 Score: 1
LOC_Os04g53540.2 Score: 1
LOC_Os04g53540.3 Score: 1
LOC_Os04g53540.4 Score: 1

Expression data

Expressed Sequence Tags

At.19179
Arabidopsis thaliana homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (AT1G05230) mRNA, complete cds /cds=p(316,2481) /gb=NM_179265
At.21209
Arabidopsis thaliana HDG1 (HOMEODOMAIN GLABROUS1); DNA binding / transcription factor (HDG1) mRNA, complete cds /cds=p(162,2588) /gb=NM_115979
At.24442
Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2) (ANL2) mRNA, complete cds /cds=p(406,2118) /gb=NM_001125435
At.2706
Arabidopsis thaliana ATML1 (MERISTEM LAYER 1); DNA binding (ATML1) mRNA, complete cds /cds=p(467,2755) /gb=NM_001036615
At.38083
Arabidopsis thaliana DNA binding / transcription factor (AT2G32370) mRNA, complete cds /cds=p(240,2417) /gb=NM_128796
At.4047
Arabidopsis thaliana PDF2 (PROTODERMAL FACTOR2); DNA binding / transcription factor (PDF2) mRNA, complete cds /cds=p(449,2680) /gb=NM_116727
Hv.26642
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf24d09, mRNA sequence /gb=AK249246
Os.11988
Oryza sativa Japonica Group cDNA clone:J013120I03, full insert sequence /gb=AK120496
Os.12432
Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds /cds=p(260,2611) /gb=AB101645
Os.20576
Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence /gb=AK318563
Os.6039
Oryza sativa Japonica Group cDNA clone:J013045A10, full insert sequence /gb=AK111544
Os.8833
Oryza sativa Japonica Group cDNA clone:002-108-E06, full insert sequence /gb=AK112099
Vvi.11868
WIN1121.C21_M07 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1121_M07 3', mRNA sequence /clone=WIN1121_M07 /clone_end=3' /gb=EC984389

Domain Architecture

Homeobox PF00046 LOC_Os04g53540.2
DomainStartEndBit scoreE-value
Homeobox10516185.51.9e-22
START2955202737e-79

Sequences