Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os04g58020.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os04g58020
Gene model
LOC_Os04g58020.1
Description
MYB_Al protein, putative, expressed
Family
MYB-related
3D structure (top 5)
1OFC 1IRZ 2CJJ 2ELK 2CU7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487691 Score: 1

Arabidopsis thaliana

AT5G08520.1 Score: 1

Carica papaya

evm.TU.supercontig_138.6 Score: 1

Micromonas sp. RCC299

105391 Score: 1

Physcomitrella patens

147199 Score: 1

Populus trichocarpa

650862 Score: 1

Sorghum bicolor

5058138 Score: 1

Vitis vinifera

GSVIVP00002580001 Score: 1

Zea mays

GRMZM2G149958_P01 Score: 1

Expression data

Expressed Sequence Tags

At.46819
Arabidopsis thaliana myb family transcription factor (AT2G38090) mRNA, complete cds /cds=p(568,1464) /gb=NM_129365
At.8762
Arabidopsis thaliana myb family transcription factor (AT5G08520) mRNA, complete cds /cds=p(622,1518) /gb=NM_120937
Hv.9331
BNEL122c5 Barley EST endosperm library Hordeum vulgare subsp. vulgare cDNA clone BNEL122c5 5' similar to Oryza sativa, mRNA sequence /clone=BNEL122c5 /clone_end=5' /gb=CV055679
Os.15556
Oryza sativa Japonica Group cDNA clone:001-208-B07, full insert sequence /gb=AK106166
Pba.1963
WS0231.B21_D04 PT-MB-A-13 Populus trichocarpa cDNA clone WS0231_D04 3', mRNA sequence /clone=WS0231_D04 /clone_end=3' /gb=CV239058
Pba.6236
WS02544.B21_N08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02544_N08 3', mRNA sequence /clone=WS02544_N08 /clone_end=3' /gb=DT490388
Ppa.8167
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_147199) mRNA, complete cds /cds=p(1,858) /gb=XM_001779294
Pth.1963
WS0231.B21_D04 PT-MB-A-13 Populus trichocarpa cDNA clone WS0231_D04 3', mRNA sequence /clone=WS0231_D04 /clone_end=3' /gb=CV239058
Pth.6236
WS02544.B21_N08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02544_N08 3', mRNA sequence /clone=WS02544_N08 /clone_end=3' /gb=DT490388
Ptp.3737
R044H10 Populus root cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU886395
Sbi.14152
DG1_123_F11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence /gb=BE356185
Vvi.10013
WIN0520.C21_A24 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0520_A24 3', mRNA sequence /clone=WIN0520_A24 /clone_end=3' /gb=EC940561
Vvi.19568
WIN1138.C21_J18 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1138_J18 3', mRNA sequence /clone=WIN1138_J18 /clone_end=3' /gb=EC990110

Domain Architecture

Myb_DNA-binding PF00249 LOC_Os04g58020.1
DomainStartEndBit scoreE-value
Myb_DNA-binding27231940.18.5e-09

Sequences